Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1885 ATGTCTGTTACGTTGCACACAAATCTCGGTGACATCAAGTGCGAGATTTCTTGCGATGAAGTCCCGAAGGCTGCCGAGAACTTTTTGGCACTATGTTCAAGTGGTTACTATGATGGAACCATATTCCATCGAAATATCAAAGGTTTTATGATACAAGGTGGAGATCCAACAGGCACGGGAAAAGGGGGAACCAGCATTTGGGGCAAAAAGTTTAATGACGAGATAAGAGAGTCGCTCAAGCACAATGCAAGAGGGATGTTGTCGATGGCTAATAGTGGAGCAAATACAAATGGGAGCCAATTTTTTATAACTTATGCAAAGCAGCCACATCTGAATGGAATATACACTGTGTTCGGTAGAGTGATTCATGGGTTTGAAGTACTTGATATCATGGAAAAGACTCAAACTGGACCGGGAGATCGTCCTCTTGCGGAGATCAGGCTCAATCGCGTGACGATACATGCTAATCCTCTTGCAGGCTGA 483 44.1 MSVTLHTNLGDIKCEISCDEVPKAAENFLALCSSGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGMLSMANSGANTNGSQFFITYAKQPHLNGIYTVFGRVIHGFEVLDIMEKTQTGPGDRPLAEIRLNRVTIHANPLAG 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 69193531 69197641 - Hsped.05g18850.1 Hepe05g1885 571150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1885 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Hepe05g1885 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Hepe05g1885 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Hepe05g1885 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Hepe05g1885 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Hepe05g1885 160 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Hepe05g1885 160 Gene3D - 1 160 IPR029000 -
Hepe05g1885 160 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 153 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Hepe05g1885 160 FunFam Peptidyl-prolyl cis-trans isomerase 1 160 - -
Hepe05g1885 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 150 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
Hepe05g1885 160 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 152 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Hepe05g1885 160 PIRSF Peptidylpro_ismrse 1 157 IPR024936 GO:0003755(InterPro)
Hepe05g1885 160 CDD Cyclophilin_PPIL3_like 1 153 - -
Hepe05g1885 160 SUPERFAMILY Cyclophilin-like 1 157 IPR029000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1885 Hepe-Chr5:69193531 Hepe06g1234 Hepe-Chr6:62075521 4.13e-47 dispersed
Hepe05g1885 Hepe-Chr5:69193531 Hepe04g1316 Hepe-Chr4:68776754 1.21e-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1885 K12734 - csv:101211474 319.316