Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1897 ATGGTGAGAGGAAAAACTCAGATGAGAAGAATTGAAAATGCGACAAGTCGGCAAGTAACCTTCTCAAAGCGTCGGAATGGGCTGCTGAAGAAAGCTTTTGAGCTCTCAGTTCTTTGTGAAGCTGAAGTTGCTCTTATCATTTTCTCTTCTAGAGCCAAACTTTATGAATTTGCAAGCTCAAGCATCCAGGCCACGGTGGGGCGATATTTCAGGCATACAAGATCAGAAACAACTCATCATCTTCAACCTTTAGCTAATCAACACAACTTACCAGCGGTTCAGCATGAGGCTGCAAGTTTATTGAAGGAGATAGAATCACTTGAAGTTTCAAAGAGGAAATTGTTGGGAGAAGGTCTAGAATCAAGCTCCTATGAAGAACTTCAACAGATAGAACAACAGCTCGAAAGGAGCTTAGCGCATGTTCGAGCTAGAAAGCACGAGGTTTACAAGGAACAGATTGAACAACTAAAAGAAAAGGAGAATTATTTGACAGCTGAAAATGCAAAGCTAGGTAAAAAGTACTTTGTTCAACGTGAGCGGCCTCGACAATCACCAACTCAACTAGGAGAAGTTTCACCTTGTCCTGAGAGAAGCTCGATTTCCGACGTCGAGACAGACTTGTTCATTGGACCGCCGAAGTCGAGATCGAAGTGA 654 42.81 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSRAKLYEFASSSIQATVGRYFRHTRSETTHHLQPLANQHNLPAVQHEAASLLKEIESLEVSKRKLLGEGLESSSYEELQQIEQQLERSLAHVRARKHEVYKEQIEQLKEKENYLTAENAKLGKKYFVQRERPRQSPTQLGEVSPCPERSSISDVETDLFIGPPKSRSK 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 69311646 69318501 - Hsped.05g18970.1 Hepe05g1897 571162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1897 217 Coils Coil 146 173 - -
Hepe05g1897 217 MobiDBLite consensus disorder prediction 180 194 - -
Hepe05g1897 217 ProSiteProfiles K-box domain profile. 90 181 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe05g1897 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe05g1897 217 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 182 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe05g1897 217 Pfam K-box region 90 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe05g1897 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe05g1897 217 FunFam Agamous-like MADS-box protein AGL13 13 77 - -
Hepe05g1897 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe05g1897 217 Gene3D - 14 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe05g1897 217 SUPERFAMILY SRF-like 3 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe05g1897 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe05g1897 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe05g1897 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe05g1897 217 Coils Coil 97 117 - -
Hepe05g1897 217 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe05g1897 217 MobiDBLite consensus disorder prediction 174 217 - -
Hepe05g1897 217 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe05g1897 217 Coils Coil 124 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0476 Hepe-Chr3:7287433 Hepe05g1897 Hepe-Chr5:69311646 5.14e-67 dispersed
Hepe05g1897 Hepe-Chr5:69311646 Hepe06g1313 Hepe-Chr6:63233347 5.22e-40 dispersed
Hepe05g1897 Hepe-Chr5:69311646 Hepe06g1597 Hepe-Chr6:66778398 1.23e-46 wgd
Hepe05g1897 Hepe-Chr5:69311646 Hepe07g0203 Hepe-Chr7:1805681 1.82e-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55682 PF01486 K-box 1.40E-24 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1897 - - - 0.0