Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1955 ATGATGTTGGAAAATGGGAGATTACTTCCAAAATCAGTCCTGTTTGAACTTCCAACGAAATTTGGAGGAGCTTGTTCCTTCAATTCCCCGAAGTTTCTCGAGGAATCATCAAATCGCGACAAGCGGCAAAACAGAGAGCTCAATTTAGAGAACGGTAGAGATTCCCCACTTTTTTCCTCTTCAATAGAGGCATTTGGTTTCCTAGAGTTTCTTGTCATGGCGGTTGTGAGTTCTATGCAAGCAGCTACGCCTCGAGCTGGTCCAACTAATTATGTTGAAGCTTCACCAATTATGATCAGCTCAAGCAGAGAGATTGTAGAAGAGCCAGTGGGAGCTATTAGTGAAGATATAATTTGTGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGATACGTACTAAAATCCTCACGTGGGAAGAAGATTTGCCTCCTTCATATTCATGTCCCTGCACAGATGATTCCATTAATGGGAACTAAATTTCCAGCAAACTCATTGGAGAAAGAGGAAGTGAGAGCATATCACGAGTTTGAGAAGCAAAATTTGTCGAGGGTCATGAATGAGTACATTCTGTACTGTCTTCAAGAAGGGGTTCATGCTGAGAGATTATGTGCTGAAGCTGAGAGTATTGAAAAGGGAATAGTTGATATGATTTCCCTGCACGGGATTAAAAAGCTTGTTATGGGAGCAGCTGTAGACAAGTGTTATTCGAGGAAAATGGTGGATCTGAAGTCTAAGAAAGCCATTTATGTGCGTTTACAGGCACCAGCTTTCTGTCACATTGAGTTTATTTGCAAGGGGAACCTCATCTGCACCAGGGAGGGTAGATCAGATAGAGCTCAAGTAGAAGCCGCCATCTCATCACCACAAACAAGTCCAGATGCTGAAGCCTCAGAAATTTCCAACCGGAGATCTCGGTCACTGCCACTGGGGCAGGCTAATAGCAGGGAAGTTGGAAGTCCATCTTTAGATTTACGTCCTAGAGGGAGATCATTGCTTGTTGACCATTTTAGAGGGAGCATACTAGATCCTACTTCTTCTCCAGATATTGTGAATGGGATTCGCACTGCAAGAAACTTGGATGTTAACATGGCTTTTGATGAATGGAGGTTATTGGCAAGGAGAAGTCCTTCTGAAAGGTCAGACAACTCCTTCCGTTCTCCTCGAGGTGTGATTGACATGGCTCCTTCTCCACTTTCCAGGGTTGAGTTCTGTGAAAATGGGCTGGAGCAGGATGGGAAAACCAGTGATTTCCTTTACAATCAATGTGAACGGGTGATGATGGAGGCTGCAAATGCGAGGCGTGATGCATTTTTAGAGGCAATTGGGCGTAGGAAATCTGAGAAAGAGACCCTTAATGCTCTACACAGGGTTAAAGCTGCAGAAGGGTTATATGCTGAAGAAATGAAACAAAGGAAGGAGGTTGAACAAGAACTAGCTCAGGAAAAGGCAAAACTTGAAAGCATAAAAAAGCAACTAAATGAAGAGATGGAAGAGCTCCGGATAGCCCAAGATCAGAAGGCTAGCCTTGAGAGAGAACTTTTAGAATCTGATCTAACGGCGACGGAGTTGGAGCAGAAGATTCTTTCTGCTGTTGAATTATTACAGAGTTACAAAAGAGAGCGAGAGGAGTTGCAGATTCAACGCGACAATGCACTTAGAGAAGCAGAGGAGCTTAGAGAAAATCAATCCGCAGGCCGATACCTTCCGCAGTTCTTTACCGAGTTCCCATTTCGGGAGATCGAGGAGGCAACTAAAAACTTTGATCCCTCCCTGAAGATTGGAGAAGGGGGATATGGGAGTATATATAAAGGTTTCTTGCGTCATACTATGGTGGCTATAAAAATCCTGCATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTATTGAGTAAGATGAGACATCCCAATCTCGTCACGCTCATTGGAGCCTGTCCTGAAGTTTGGGTTCTCATCTACGAATACCTCTGTAACGGAAGCCTCGAAGATAGGCTCAGCTGCAAGGACAATACTCCGCCTTTATCTTGGCAAACACGAATACGCATCGCCACTGAGTTATGCTCGGCCCTTATGTTTCTTCACTCAAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGGAAATATATTACTTGATGCAAATTTTGTATGCAAGCTTGGCGACTTTGGAATTTGTCGCTTATTGTCTCGGGATGAAATACTAAACAACAACGAAACACTTGTTTGGAGAACTGAAAACCCCAAGGGAACTTTTGCTTACATGGATCCTGAATTCCTTTCATGTGGAGAGCTAACAACAAAGTCAGATGTTTATTCATTCGGGATAATACTGTTGCGGTTGTTGACTGGTAGGTCTGCAATGGGTATATCAAAGGAAGTTCAATATGCAGTGGGAAATGGAAAGTTAAAATCCATTTTGGATCCTTTAGCCGGAGATTGGCCATTCGTGCAGGCTGAACAGCTCGCTCGATTGGCATTGAGGTGTTGCGATATGAATCGAAAGAGCCGCCCCGATCTCATTACTGATGTCTGGAGGGTACTCGGACCAATGAGGGCTGCCTGTGGGGGCTTATTGTCTGTCCAGCTCGGTTCTGCAGAACACTTGCAACCTCCCCCTTATTTTATCTGTCCCATCTTTCAGGAAGTCATGCAGGATCCACATGTGGCTGCAGATGGTTTTACTTACGAGGCGGAGGCCGTGAGAGGCTGGCTAGACAGTGGACATGATACTTCACCAATGACAAATCTTAAGCTCGAGCACCGCAACCTCGTCCCAAACCGCGGTCTTCGTTCTGCTATCCAGGAGTGGCTCGAACGGAAGTGA 2853 44.69 MMLENGRLLPKSVLFELPTKFGGACSFNSPKFLEESSNRDKRQNRELNLENGRDSPLFSSSIEAFGFLEFLVMAVVSSMQAATPRAGPTNYVEASPIMISSSREIVEEPVGAISEDIICVAVGKDVKECLSVLRYVLKSSRGKKICLLHIHVPAQMIPLMGTKFPANSLEKEEVRAYHEFEKQNLSRVMNEYILYCLQEGVHAERLCAEAESIEKGIVDMISLHGIKKLVMGAAVDKCYSRKMVDLKSKKAIYVRLQAPAFCHIEFICKGNLICTREGRSDRAQVEAAISSPQTSPDAEASEISNRRSRSLPLGQANSREVGSPSLDLRPRGRSLLVDHFRGSILDPTSSPDIVNGIRTARNLDVNMAFDEWRLLARRSPSERSDNSFRSPRGVIDMAPSPLSRVEFCENGLEQDGKTSDFLYNQCERVMMEAANARRDAFLEAIGRRKSEKETLNALHRVKAAEGLYAEEMKQRKEVEQELAQEKAKLESIKKQLNEEMEELRIAQDQKASLERELLESDLTATELEQKILSAVELLQSYKREREELQIQRDNALREAEELRENQSAGRYLPQFFTEFPFREIEEATKNFDPSLKIGEGGYGSIYKGFLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEVWVLIYEYLCNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPGNILLDANFVCKLGDFGICRLLSRDEILNNNETLVWRTENPKGTFAYMDPEFLSCGELTTKSDVYSFGIILLRLLTGRSAMGISKEVQYAVGNGKLKSILDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLITDVWRVLGPMRAACGGLLSVQLGSAEHLQPPPYFICPIFQEVMQDPHVAADGFTYEAEAVRGWLDSGHDTSPMTNLKLEHRNLVPNRGLRSAIQEWLERK 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 70022126 70028462 + Hsped.05g19550.1 Hepe05g1955 571220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1955 950 SUPERFAMILY RING/U-box 875 949 - -
Hepe05g1955 950 SMART serkin_6 591 857 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1955 950 SMART Ubox_2 883 946 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe05g1955 950 ProSiteProfiles Protein kinase domain profile. 591 861 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1955 950 PANTHER OS02G0152300 PROTEIN 119 944 IPR051348 -
Hepe05g1955 950 MobiDBLite consensus disorder prediction 285 327 - -
Hepe05g1955 950 MobiDBLite consensus disorder prediction 286 322 - -
Hepe05g1955 950 Gene3D Transferase(Phosphotransferase) domain 1 664 863 - -
Hepe05g1955 950 Pfam U-box domain 881 950 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe05g1955 950 ProSiteProfiles U-box domain profile. 879 950 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe05g1955 950 CDD STK_N 120 270 - -
Hepe05g1955 950 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 879 950 IPR013083 -
Hepe05g1955 950 Gene3D Phosphorylase Kinase; domain 1 571 663 - -
Hepe05g1955 950 FunFam receptor-like protein kinase FERONIA 554 663 - -
Hepe05g1955 950 ProSitePatterns Protein kinases ATP-binding region signature. 597 618 IPR017441 GO:0005524(InterPro)
Hepe05g1955 950 Coils Coil 461 565 - -
Hepe05g1955 950 CDD RING-Ubox_WDSUB1-like 881 936 - -
Hepe05g1955 950 SUPERFAMILY Protein kinase-like (PK-like) 567 849 IPR011009 -
Hepe05g1955 950 Pfam Protein kinase domain 596 848 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1955 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1955 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1394 Hepe-Chr4:69587232 Hepe05g1955 Hepe-Chr5:70022126 2.60e-42 dispersed
Hepe05g1955 Hepe-Chr5:70022126 Hepe08g0791 Hepe-Chr8:7089044 4.70e-150 dispersed
Hepe05g1954 Hepe-Chr5:69973304 Hepe05g1955 Hepe-Chr5:70022126 2.42e-131 tandem
Hepe03g0558 Hepe-Chr3:10877614 Hepe05g1955 Hepe-Chr5:70022126 2.15e-260 wgd
Hepe05g1955 Hepe-Chr5:70022126 Hepe07g0145 Hepe-Chr7:1324383 3.32e-178 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001926 1 4 1 0 1 0 3 1 1 2 2 1 3 2 1 3 1 0 3 1 2 3 3 1 2 2 3 4 2 1 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72844 PF00069 Pkinase 1.30E-41 CL0016 Hepe PK