Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1964 ATGGCTGCCAATAGGCGTTTCATTTTGAACTCGATTTATAGTTCCTGCTTATTTCATTCTTACAAGCCTTACACTAAGATTTCCGTTTCCGAGTATGTTGATCGCGTTGTTAGATCGAGTGCCGTTCTAAATAACAAATATTCCGATGAATCACACAGCTTGAAGAACACCCCACGTATTGGATTCCGAAGAGAAGCATATGTATGTCGTTTACATATCCCTAGTTATGGTACAATTCTGTCAAATCCTCGATTCTATTCATCGGCTTCTGGTAGGAAAGCTGATGTAATTGGAGATACTGGTGTTCCTGCCGCTTCTTCTGGTGTTGAAGCGGATATCAGTAACTCCTCTGATCTTGGAACGGACTTGCTCGAAAGAGTTAAGGATGTATGGCAGAGTGCATCATCTTTTACTGGGGAGAAGGCTAAAGAAGTGTCTGATGAATTATCTCCTCATGTAGATAAAATCTTAGATTCACATCCATATCTAAAAAATGTAATTGTTCCTGTGAGTTTGACCTTAACTGCTACGGTTTTGGCTTGGGTGGTAATGCCTAGGTTTTTGAGGAGATTCCATAAGTATTCTATGCGAGGTCCTGTTGCCATACTATCTGGAAGCATATCTGTGGAGGAAATTCCTTATGAGAAAAGTTGTTGGGGCGCCATGGAGGATCCTTTGCGATATCTTGTTACATTCTTTGCATTCTCTCAAATTGGCATGATGGTTGCACCAACCGCCATAGCATCAGAGTTTGTTTCACAGGTGTCGAGGGGGGCTGTCATCCTTTCCATAGTCTGGTTTGTTTATCGCTGGAAAACAAACGTGTTCGCTCGAGCATTGGCCTCCCAAACTTTTTTAGGGCTTGATCGGGGAAAGTTACTTACCCTTGACAGAGTTTCATCTATTGGTATATTTGCAATTGGATTAATGGCTTTGGCTGAGGCATCTGGGGTGGCTGTTCAATCTATATTGACGATTGGTGGTATTGGAGGAGTGACCACTGCTTTTGCTGCGAGGGATGTACTTGGGAATGTTTTAAGCGGCTTAACAATGCAATTTTCACAACCCTTTTCCCCTGGAGATACGATTAAGGCTGGTGCTATCGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACAACACTATTAAGCGCTGAAAAGTTTCCCATCGTTGTTCCAAATTCTCTATTTTCTAGCCAGGCAATTATAAATAAGTCGCGGGCGCAGTTTCGAGCAATCACGAAGAAAATTCCTTTGCAAGTTGATGATCTTAGTACAGTTTCTCAGATATCAGATAATATTAAGAGTATGCTTAGGTCTCACCCTAAAGTTTTCTTGGGTAAGGAGGCTCCTTATTGTTTCCTCACTCAAGTTGAGAGTACATATGCAGAATTGACAATTGGCTGCAACATTCAAAAGATGGGTAAAGAAGAACTTTTCTCTACAGAGCAGGATATTCTTTTTCGGTCGGTACAGATCATTAAGGAAAATGGTGCAACCTTAGGTAGCATCATGTTAGATTGGACGAACAAGTGA 1536 41.6 MAANRRFILNSIYSSCLFHSYKPYTKISVSEYVDRVVRSSAVLNNKYSDESHSLKNTPRIGFRREAYVCRLHIPSYGTILSNPRFYSSASGRKADVIGDTGVPAASSGVEADISNSSDLGTDLLERVKDVWQSASSFTGEKAKEVSDELSPHVDKILDSHPYLKNVIVPVSLTLTATVLAWVVMPRFLRRFHKYSMRGPVAILSGSISVEEIPYEKSCWGAMEDPLRYLVTFFAFSQIGMMVAPTAIASEFVSQVSRGAVILSIVWFVYRWKTNVFARALASQTFLGLDRGKLLTLDRVSSIGIFAIGLMALAEASGVAVQSILTIGGIGGVTTAFAARDVLGNVLSGLTMQFSQPFSPGDTIKAGAIEGQVVEMGLMTTTLLSAEKFPIVVPNSLFSSQAIINKSRAQFRAITKKIPLQVDDLSTVSQISDNIKSMLRSHPKVFLGKEAPYCFLTQVESTYAELTIGCNIQKMGKEELFSTEQDILFRSVQIIKENGATLGSIMLDWTNK 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 70113509 70118376 + Hsped.05g19640.1 Hepe05g1964 571229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1964 511 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 142 505 - -
Hepe05g1964 511 SUPERFAMILY Sm-like ribonucleoproteins 340 405 IPR010920 -
Hepe05g1964 511 Gene3D - 356 404 IPR023408 -
Hepe05g1964 511 Pfam Mechanosensitive ion channel, beta-domain 340 407 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe05g1964 511 Gene3D - 251 354 - -
Hepe05g1964 511 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 255 339 IPR011014 GO:0016020(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1964 K22047 - csv:101220483 749.199