Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1964 ATGGCTGCCAATAGGCGTTTCATTTTGAACTCGATTTATAGTTCCTGCTTATTTCATTCTTACAAGCCTTACACTAAGATTTCCGTTTCCGAGTATGTTGATCGCGTTGTTAGATCGAGTGCCGTTCTAAATAACAAATATTCCGATGAATCACACAGCTTGAAGAACACCCCACGTATTGGATTCCGAAGAGAAGCATATGTATGTCGTTTACATATCCCTAGTTATGGTACAATTCTGTCAAATCCTCGATTCTATTCATCGGCTTCTGGTAGGAAAGCTGATGTAATTGGAGATACTGGTGTTCCTGCCGCTTCTTCTGGTGTTGAAGCGGATATCAGTAACTCCTCTGATCTTGGAACGGACTTGCTCGAAAGAGTTAAGGATGTATGGCAGAGTGCATCATCTTTTACTGGGGAGAAGGCTAAAGAAGTGTCTGATGAATTATCTCCTCATGTAGATAAAATCTTAGATTCACATCCATATCTAAAAAATGTAATTGTTCCTGTGAGTTTGACCTTAACTGCTACGGTTTTGGCTTGGGTGGTAATGCCTAGGTTTTTGAGGAGATTCCATAAGTATTCTATGCGAGGTCCTGTTGCCATACTATCTGGAAGCATATCTGTGGAGGAAATTCCTTATGAGAAAAGTTGTTGGGGCGCCATGGAGGATCCTTTGCGATATCTTGTTACATTCTTTGCATTCTCTCAAATTGGCATGATGGTTGCACCAACCGCCATAGCATCAGAGTTTGTTTCACAGGTGTCGAGGGGGGCTGTCATCCTTTCCATAGTCTGGTTTGTTTATCGCTGGAAAACAAACGTGTTCGCTCGAGCATTGGCCTCCCAAACTTTTTTAGGGCTTGATCGGGGAAAGTTACTTACCCTTGACAGAGTTTCATCTATTGGTATATTTGCAATTGGATTAATGGCTTTGGCTGAGGCATCTGGGGTGGCTGTTCAATCTATATTGACGATTGGTGGTATTGGAGGAGTGACCACTGCTTTTGCTGCGAGGGATGTACTTGGGAATGTTTTAAGCGGCTTAACAATGCAATTTTCACAACCCTTTTCCCCTGGAGATACGATTAAGGCTGGTGCTATCGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACAACACTATTAAGCGCTGAAAAGTTTCCCATCGTTGTTCCAAATTCTCTATTTTCTAGCCAGGCAATTATAAATAAGTCGCGGGCGCAGTTTCGAGCAATCACGAAGAAAATTCCTTTGCAAGTTGATGATCTTAGTACAGTTTCTCAGATATCAGATAATATTAAGAGTATGCTTAGGTCTCACCCTAAAGTTTTCTTGGGTAAGGAGGCTCCTTATTGTTTCCTCACTCAAGTTGAGAGTACATATGCAGAATTGACAATTGGCTGCAACATTCAAAAGATGGGTAAAGAAGAACTTTTCTCTACAGAGCAGGATATTCTTTTTCGGTCGGTACAGATCATTAAGGAAAATGGTGCAACCTTAGGTAGCATCATGTTAGATTGGACGAACAAGTGA 1536 41.6 MAANRRFILNSIYSSCLFHSYKPYTKISVSEYVDRVVRSSAVLNNKYSDESHSLKNTPRIGFRREAYVCRLHIPSYGTILSNPRFYSSASGRKADVIGDTGVPAASSGVEADISNSSDLGTDLLERVKDVWQSASSFTGEKAKEVSDELSPHVDKILDSHPYLKNVIVPVSLTLTATVLAWVVMPRFLRRFHKYSMRGPVAILSGSISVEEIPYEKSCWGAMEDPLRYLVTFFAFSQIGMMVAPTAIASEFVSQVSRGAVILSIVWFVYRWKTNVFARALASQTFLGLDRGKLLTLDRVSSIGIFAIGLMALAEASGVAVQSILTIGGIGGVTTAFAARDVLGNVLSGLTMQFSQPFSPGDTIKAGAIEGQVVEMGLMTTTLLSAEKFPIVVPNSLFSSQAIINKSRAQFRAITKKIPLQVDDLSTVSQISDNIKSMLRSHPKVFLGKEAPYCFLTQVESTYAELTIGCNIQKMGKEELFSTEQDILFRSVQIIKENGATLGSIMLDWTNK 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 70113509 70118376 + Hsped.05g19640.1 Hepe05g1964 571229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1964 511 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 142 505 - -
Hepe05g1964 511 SUPERFAMILY Sm-like ribonucleoproteins 340 405 IPR010920 -
Hepe05g1964 511 Gene3D - 356 404 IPR023408 -
Hepe05g1964 511 Pfam Mechanosensitive ion channel, beta-domain 340 407 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe05g1964 511 Gene3D - 251 354 - -
Hepe05g1964 511 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 255 339 IPR011014 GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1964 K22047 - - csv:101220483 749.199
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1964 . 122 510 Mechanosensitive Ion Channel Family AT4G00290 65.6 4.6e-146 515.0
Hepe10g0430 . 10 688 Mechanosensitive Ion Channel Family AT5G10490 57.1 1.9e-200 696.0
Hepe07g0565 . 64 724 Mechanosensitive Ion Channel Family AT5G10490 57.9 2.5e-195 679.1
Hepe10g0430 . 10 653 Mechanosensitive Ion Channel Family AT1G58200 56.9 1.5e-192 669.8
Hepe07g0565 . 6 696 Mechanosensitive Ion Channel Family AT1G58200 51.4 3.2e-174 609.0
Hepe08g0320 . 39 920 Mechanosensitive Ion Channel Family AT1G53470 55.5 3.4e-261 898.3
Hepe08g0320 . 39 915 Mechanosensitive Ion Channel Family AT3G14810 51.8 3.1e-243 838.6
Hepe08g0320 . 39 920 Mechanosensitive Ion Channel Family AT1G78610 58.4 3.9e-278 954.5
Hepe08g0320 . 216 916 Mechanosensitive Ion Channel Family AT2G17000 60.2 3.4e-234 808.5
Hepe09g0905 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.0 6.0e-195 677.9
Hepe03g0405 . 108 684 Mechanosensitive Ion Channel Family AT5G12080 50.3 2.6e-150 529.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33