Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1979 ATGGTCGAAATGGGGGGCCAAGAGGGACAGGGCGGCCGGGGCAGAGGAGGAGGCAGAGAAAGAGATGGACGGCGGTGGATAAAGCAAGTTAAAAGGCGATTGAGGAGAAAAGGAGAGATGGAGGAACGTGACCAACAATACTCGTCGCCGCCTCCATGTACGGACACTCATGCAACTTCTCTAGAAATCGACTGGATTGCAGCTCTCTCCGGCCAAGTCACCGAAGACTTCGCGCCGGCGACAGCAACCTGCGAGCCATCGGAAATGAGATCGGACGAAGAGAAGGGGAATCAGATGAGGAATGGCGGCCAACGGTGGAGAAGAGTCCCCGGCCGTCGGAGGTTTGAGTTTCAGACAAGGAGTGCCGAAGATATTCTTGACGATGGGTATCGGTGGCGGAAGTACGGACAGAAAGCTGTCAAAGACAGCCTCTATCCGAGGAGCTATTATAGGTGTACACATCTCACATGCAATGTGAAGAAACAAATTCAAAGGCTATCAAAAGACACAAGCATTGTTGTGACTACTTATGAGGGAATTCACAATCATCCTTCTCACATCCTCATGCAAACCCTAACTCCTCTTCTCAAACAAATTCACTTCCTTTCCACTTTCTAA 618 50.49 MVEMGGQEGQGGRGRGGGRERDGRRWIKQVKRRLRRKGEMEERDQQYSSPPPCTDTHATSLEIDWIAALSGQVTEDFAPATATCEPSEMRSDEEKGNQMRNGGQRWRRVPGRRRFEFQTRSAEDILDDGYRWRKYGQKAVKDSLYPRSYYRCTHLTCNVKKQIQRLSKDTSIVVTTYEGIHNHPSHILMQTLTPLLKQIHFLSTF 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 70260427 70261990 + Hsped.05g19790.1 Hepe05g1979 571244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1979 205 SUPERFAMILY WRKY DNA-binding domain 119 184 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g1979 205 Gene3D WRKY domain 111 185 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g1979 205 MobiDBLite consensus disorder prediction 1 54 - -
Hepe05g1979 205 MobiDBLite consensus disorder prediction 87 101 - -
Hepe05g1979 205 Pfam WRKY DNA -binding domain 127 184 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g1979 205 ProSiteProfiles WRKY domain profile. 121 186 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g1979 205 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 45 184 IPR044810 GO:0003700(InterPro)
Hepe05g1979 205 SMART WRKY_cls 126 185 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g1979 205 MobiDBLite consensus disorder prediction 83 105 - -
Hepe05g1979 205 FunFam WRKY transcription factor 57 112 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1979 Hepe-Chr5:70260427 Hepe07g0768 Hepe-Chr7:9285090 8.61e-48 dispersed
Hepe05g1979 Hepe-Chr5:70260427 Hepe05g1187 Hepe-Chr5:57725446 3.97e-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55692 PF03106 WRKY 1.00E-24 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1979 - - - 0.0