Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g2018 ATGTCCAAGTGTATGGGTTCCCAGATACCAAAATCTGTAAGGTTTGGACATCCAACTTCTGATTTCCATGTCAAATATGGAGGTTACCAAAACAGAAGCAGACTGTCTCCAAGGTCAATATTGGAATGCATACAGAGGAAATTTTCAAGTGCTTCTGAGAGCTTTAGAAGCATAATAACACACTTAGGCTTCAAGAATTCAGGTGATCAGTCAGTAAAGAAACCAGAATTTTGGAAGAAAATTCTTGATCCACAGAAGCCATTGCTTCAGCAATGGAACAAGATATTTGTGCTGTCCTGTGTCATAGCAGTAGCTGTTGACCCTCTCTTCTTTTACGTCCCAGTGATCGATGGAAAACATCAATGCCTAACGATGGACCGACCCCTTATGATCGTTGCTTGTGTTCTTCGTTCAGTCATTGACTTATTTTATCTACTCCACATGATCTTTGAATTTCGAACTGGTTTTCTGCCCCCTTCTTTACCAGTATTTGGAAGTGGTGAATTAATCGAAGATCCAGCAGCTATAGCAAAGAGATACCTCTCCACAAACTTCTTGATTGATATCTTATCCATTCTCCCACTGCCTCAGCTTTTGGTACTAGTTATTGTGCCTGCAGCCAAAGGCCCGATTCCATTGAAGACGAAGAACGTGGTGAAGATTGCAGTTGTTTTGCAATATGTTCCAAGGCTTTTTCGAATTTATCCACTATACAGAGAAGTAACCAGAACTTCTGGCATACTGACAGAAACTGCTTGGAGTGGAGCTGCCTTCAATCTCCTTATTTATATGCAAGCTAGTCATGTAGTTGGCGCCATTTGGTATTTGTTAGCAATAGAACAACAAGCCAAATGCTGGCTCGAGGCATGCCGAAAAGATAACTGTATCGAGACTATCGACAATTTTCTGTACTGTGGAGATCATAGTAAACCAATATACGCATCTATAAATACGTATTGCGCTCCTAAAGAGTCTGAAGATGGCAAGACCTTCAACTTTGGGATGTATGTTGATGCCCTTACGTTTCATTTAACCGAGACGACGAGTTTTCGCCGAAAATTCTTCTATTCCTTCTGGTGGGCTCTGCAAAATGTCGGCTCTAGTGGACAAAACCTTAAAGTAAGCAATTACATGGGGGAGGTTTTTTTTGCTGTCTTCATTGCCTTCCTTGGTTTGGTTTTATTCGCATTACTCATTAGCAATATTCAGAAATATCTGCAGTCAGCAACTGTCAAAGTAGAGCAAATGAGAATTAACCGAAGAGACGCCGAGCATTGGATGGCACATCGAATGCTCCCGGAGGGCTTGAGGCAGCGTATTAGACGATATGATCAGTACAAATGGCAACTAAACAGGGGAGTTAAGGAAGAGGAACTCATTAGTAACCTTCCTAAAGACCTTAGGAGAGACATCAAAAGCCATCTTTGCTTGCCCCTTCTCAAGAAAGTGCGACTTTTTAGCGGCATGGATAAGCAACTGTTGGACACGATGTGCGAATATCTCAAGCCTGTGTTATTCACAGAGAAGAGCTTCATTCTGCAAGAGGGTGACCCAATTGATATGATGCTATTTATCATGAAAGGAAAGCTTGCTGCCAGTACTAGTTATGGTTGGAAAAACAACTCGTACTCGATCACTCTTAAGGCTGGCGACTTTTGCGGCGAAGAGCTAGTTCAATGGGCAATGGATCCCTCCTTCACTTCTCTTCCCATTTCAACCAGAACAGTTAAATCTCTAGCTGAGGTTGAAGCCTTTGCTCTAAAGGCTGATGAGCTGAAATCTGTAACTAGTCAGTTCCACTTCCAGCGCCTCAATAGCAAGCAATTCCAACTCTCAGTGAGGTTCTACTCTCATCAGTGGAAAGTTTGGGGAGCCTATAAAATACAAGAAGCTTGGCATGAGTACCGCGAAAGAAAGCGAATGAGACGGGGTGGAGATGGCAGGTTTCAAGATGCATTGGCTAAAACAGTTGGTGCCTCGTCGAAACTCACACGGGTGATGACACTACCGCCACCTCCGAAGCCAGACGATAAGCAAGACAAGCCAAACTTCACCATCTTGGATCTTTAA 2070 42.9 MSKCMGSQIPKSVRFGHPTSDFHVKYGGYQNRSRLSPRSILECIQRKFSSASESFRSIITHLGFKNSGDQSVKKPEFWKKILDPQKPLLQQWNKIFVLSCVIAVAVDPLFFYVPVIDGKHQCLTMDRPLMIVACVLRSVIDLFYLLHMIFEFRTGFLPPSLPVFGSGELIEDPAAIAKRYLSTNFLIDILSILPLPQLLVLVIVPAAKGPIPLKTKNVVKIAVVLQYVPRLFRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYLLAIEQQAKCWLEACRKDNCIETIDNFLYCGDHSKPIYASINTYCAPKESEDGKTFNFGMYVDALTFHLTETTSFRRKFFYSFWWALQNVGSSGQNLKVSNYMGEVFFAVFIAFLGLVLFALLISNIQKYLQSATVKVEQMRINRRDAEHWMAHRMLPEGLRQRIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKSHLCLPLLKKVRLFSGMDKQLLDTMCEYLKPVLFTEKSFILQEGDPIDMMLFIMKGKLAASTSYGWKNNSYSITLKAGDFCGEELVQWAMDPSFTSLPISTRTVKSLAEVEAFALKADELKSVTSQFHFQRLNSKQFQLSVRFYSHQWKVWGAYKIQEAWHEYRERKRMRRGGDGRFQDALAKTVGASSKLTRVMTLPPPPKPDDKQDKPNFTILDL 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 70747854 70751526 + Hsped.05g20180.1 Hepe05g2018 571283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g2018 689 SUPERFAMILY Voltage-gated potassium channels 84 407 - -
Hepe05g2018 689 MobiDBLite consensus disorder prediction 663 689 - -
Hepe05g2018 689 SMART cnmp_10 485 614 IPR000595 -
Hepe05g2018 689 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 69 643 - -
Hepe05g2018 689 FunFam Cyclic nucleotide-gated ion channel 1 412 476 - -
Hepe05g2018 689 Gene3D Helix hairpin bin 411 476 - -
Hepe05g2018 689 Gene3D - 95 409 - -
Hepe05g2018 689 CDD CAP_ED 485 616 IPR000595 -
Hepe05g2018 689 ProSiteProfiles cAMP/cGMP binding motif profile. 485 555 IPR000595 -
Hepe05g2018 689 Pfam Ion transport protein 93 412 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe05g2018 689 MobiDBLite consensus disorder prediction 674 689 - -
Hepe05g2018 689 Gene3D Jelly Rolls 483 600 IPR014710 -
Hepe05g2018 689 SUPERFAMILY cAMP-binding domain-like 414 600 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g2018 Hepe-Chr5:70747854 Hepe06g0783 Hepe-Chr6:54472140 3.02e-232 dispersed
Hepe05g2017 Hepe-Chr5:70741706 Hepe05g2018 Hepe-Chr5:70747854 0.0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g2018 K05391 - csv:101206492 1030.01