Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g2030 ATGAAGATTGAAGATGGGTTGAGGAGTGTGGGTGGGAAAGATGAGGATAAGACTGTGATTGCTTCTGTTCTGGGGACTCGGGCTTTTAATTACTTGATGTCTTCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCTGTGAGGAATGATGAGAATTTGCAGAACAAGCTTTCGGATCTGGTCGAGAGACCGAACGCTTCGAATTTCAGCTGGAATTATGCAATTTTCTGGCAGCTTTCCCATTCTAAATCTGGTGAATGGGTTTTGGGATGGGGAGATGGATCTTGTAGAGATCCTAGGGATGGAGAGGAAACAGAAGCTACACAGATTCTTAGTCTTCGGCTTGAAGATGATAGCCAACAGAGGATGAAGAAAAGAGCTCTGCAGAAGCTTCACACACTGTTTGGAGGCTCTGATGAGGATAATTATGCTCTTGGATTGGATAAAGTTACTAATACTGAAATGTTTTTTCTTGCTTCCATGTATTTCTCCTTCCCCCGTGGCGAGGGGGGCCCTGGGAAGTGTTTGGCATCTGGGAAACATATCTGGCTTCTGGATGTGTTCAATTCGCCGTCGGAGTATTGTGTGAGATCGTATCTGGCGAAATCTGCTGGGATTCGGACGGTCGTTTTGGTGCCGACTGATATTGGAGTAGTTGAATTGGGGTCTGTGAGATCCGTGAGTGAGAGCGTAGAGCTAGTGCAGTTGATTAGATCGTTGTTTTCATCTCAACATTCACTTGATAGAGTGAGGTCGTCGGCTGCGATGTCGATGATGGCTGAAAGAAAAGATGAGAACACCCCATTTGCGAGTTTGGGTATTGCAGAAAGAGGAGAAGGAGCAGGAGCAGGAGGGGGGATTCCTAAGGTTTTTGGGCAGAGTTTGAACGCGGGGAACATGGGTCGATCTCATTTCAGAGAGAAACTGGCAATTAGGAAGATGGATGAGAGGTCATGGGAAGCATGTGCAAATGGAGGGAAAATTCAGTTTCAAAGCCCCCGAAATGGCATTCGCAGCCCGAGTTTGGGTCATGTTCATGGTCTCAAGCAGGGGAATCCTACAGAAATTTATGGCGCTCCAACTCCACCACCAGTAAATAATAATCACGAGCCGCTCGTCAATGGAGCCAGAGACGAATTTTGTCACAATCCCTATCAAGCACAAAAGCTGGTCCAAATGCAAATTGATTTTTCCGTAGCAACATCAAGGCCTTCTGTGACTAACCGTGTAGGTGCAGATTCAGAGCATTCAGATGTTGAGCCTCAATGCAAAGAAGAGGGGCCTGTCACCGATGAAAGACGACCACGCAAACGAGGCAGAAAGCCCGCAAATGGCAGGGAGGAACCACTAAATCATGTGGAGGCGGAGAGACAGCGACGTGAAAAATTGAACCAGCGATTTTATGCTTTACGAGCTGTTGTGCCCAATATCTCCAAGATGGACAAAGCTTCACTGCTGGGAGATGCCATTGCTTACATCAACGAGCTTCAAGCAAAAGTGAAGGCCATGGAATTCGAAAGAGAGAAATCCGGTGTTACCTCAAGTGATGCATCCCCTTCAGAGGTGAACCCAGAAATTGAAAACAAAGATCAATTCCTTGACGTCGACATTGACGTCGAAGCTGCTCACGACAAAGTCATCGTGAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCAAGAGTTATCAAGGCAATGAAAGATGCTCAGATCAATGTTGTTGATTCAAATCTCTCCGAAGCAAACGATACAGTTTCGCACACATTTATCATCAAGTCACCCGGTTCCGAGCAGTTGACGAAGGAACAGTTGATAGCCGCATTTTCCCGCGACTCCACTTCATTGCATCCTCTATCAACAGCTGGGTAG 1869 46.55 MKIEDGLRSVGGKDEDKTVIASVLGTRAFNYLMSSCSVSNENLFMAVRNDENLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGEETEATQILSLRLEDDSQQRMKKRALQKLHTLFGGSDEDNYALGLDKVTNTEMFFLASMYFSFPRGEGGPGKCLASGKHIWLLDVFNSPSEYCVRSYLAKSAGIRTVVLVPTDIGVVELGSVRSVSESVELVQLIRSLFSSQHSLDRVRSSAAMSMMAERKDENTPFASLGIAERGEGAGAGGGIPKVFGQSLNAGNMGRSHFREKLAIRKMDERSWEACANGGKIQFQSPRNGIRSPSLGHVHGLKQGNPTEIYGAPTPPPVNNNHEPLVNGARDEFCHNPYQAQKLVQMQIDFSVATSRPSVTNRVGADSEHSDVEPQCKEEGPVTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKVKAMEFEREKSGVTSSDASPSEVNPEIENKDQFLDVDIDVEAAHDKVIVKVSCPLESHPASRVIKAMKDAQINVVDSNLSEANDTVSHTFIIKSPGSEQLTKEQLIAAFSRDSTSLHPLSTAG 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 70826842 70830281 - Hsped.05g20300.1 Hepe05g2030 571295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g2030 622 CDD bHLH_AtAIB_like 444 518 - -
Hepe05g2030 622 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 447 496 IPR011598 GO:0046983(InterPro)
Hepe05g2030 622 Pfam Helix-loop-helix DNA-binding domain 451 497 IPR011598 GO:0046983(InterPro)
Hepe05g2030 622 Gene3D - 440 510 IPR036638 GO:0046983(InterPro)
Hepe05g2030 622 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 450 508 IPR036638 GO:0046983(InterPro)
Hepe05g2030 622 PANTHER MYC 40 611 IPR045084 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Hepe05g2030 622 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 241 IPR025610 -
Hepe05g2030 622 MobiDBLite consensus disorder prediction 413 458 - -
Hepe05g2030 622 SMART finulus 453 502 IPR011598 GO:0046983(InterPro)
Hepe05g2030 622 MobiDBLite consensus disorder prediction 406 458 - -
Hepe05g2030 622 FunFam Transcription factor bHLH13 440 513 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g2030 Hepe-Chr5:70826842 Hepe06g1943 Hepe-Chr6:70723119 1.16e-91 dispersed
Hepe05g2030 Hepe-Chr5:70826842 Hepe06g1020 Hepe-Chr6:58162673 2.08e-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55698 PF14215 bHLH-MYC_N 2.30E-53 CL0161 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g2030 - - - 0.0