Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g2042 ATGGAGTCTCCTGATACTGCTGCTGAGAAAGATCCAACCGGGCGATACGTTCGGTATGGTGAAATCTTGGGAAGGGGCGCTTTCAAGACAGTTTACAAGGCATTCGACGAAGTTGATGGAATCGAAGTTGCCTGGAACCAAGTTAGGATTGATGGTTTCTTGCAGTCACCTGAGGATTTAGAAAAGTTGTACTCTGAAGTACATCTACTTAAATCATTAAAACATGATAATATTATTAAGTTCTACAATTCTTGGGTGGATGATAAGAAGAAAACAGTCAACATGATCACTGAGCTCTTCACATCTGGGAGTTTGAGGCAATACCGTAAAAAACATAAACATGTTGATATGAAGGCCATAAAGAATTGGGCACGACAGGTTCTCCGAGGGTTGGTCTATCTTCACAGTCATGATCCTCCCATTATTCATAGAGATTTGAAAGGTGATAATATTTTTATTAATGGAAACCATGGAGAAGTTAAAATTGGAGATCTTGGATTAGCAATTGTTATGCAGCAGCCGACTGCTCGAAGTGTAATTGGAACTCCTGAGTTCATGGCTCCTGAGCTTTATGAAGAGGAGTACAATGAGCTTGTTGATGTATATTCTTTTGGGATGTGCATGCTGGAGATGGTTACCTTTGAGTATCCATATAGTGAATGTAAAAATCCAGCTCAGATCTTTAAGAAAGTTACATCTGGTATTAAACCTGCTTCCCTTGCTAAGGTGAGTGATCCACTGATCATGGAGTTCATCAATAAATGTTTGGTTCCAGCGCAGGAAAGGTTGTCTGCAAAAGAGCTCCTTAAAGACTCATTCCTTCAAGTAGTGAACCCAAAGGAATCAGCGCGTGAGCCCCTACGGTTACCTAACCAAGTTCCTAGATCAATAAACTTGCCAAAGAGTGGGCCTATATCCATGGACATGGACATTGACATTGACCACAAACCACATTCTTTAAGCACTTGTGCTGAAAGCAATAATGGGAGTCTATGCTTTCCAGTCGTGGAATTCCAGACTATGAATAAGAACAACGAGTTTAGGTTGCGTGGAAATAAGAATGATGACAACTCGGTGGCATTAACCTTGCGTATTGCCGACTCGAATGGTCGAGTGAGGAATATACATTTTACGTTTTATCTCGATTCTGATACTGCACTATCAGTGGCCGCTGAAATGGCTGAACACTTGGAGTTGATAAATCATGATGTGGAATTCATAGCTGAATTTATTGATTTTTTGATAACAAAACTTATACCTGGTTGGAAGCCCTTGGCTGTTTATTCCTCAAATGGAGAGTTAAGTCTTTGTAGCGGCCCCCCGATCCTTAAAAGTGCCAAATCATCTATCGCATCTCCATGGGATTCAATGTCAACTGTTATTCATGATGTGTTGGTCGAACAAGACTTTTCCTCTGGGTTAGTGATTAGTCCTCAAAAGGATTTTCTGCAATCTGAGGGAGATGGCTGGCCTGATGATATTCCCAATCACATTTTTGATACTTGTCCTTCTTCTCCCAGTTTGGCTAATTTTGAGGGCCTGAATTCCCATGCTTCATTTGCCTCGGAGTTACTGGTCGAAGGCGAAGATTGTTCTACCAAAAGTGCTAAGGTGATTGATTGTTCCAATATTGATGGAAGCTCGAAAGGCTCGAGCTGGTCGATTGCGGAACTAGATCAGCTCCATGGTTCATCATATGTTGAGCAGAGAAATGTTAGTGATATTGGAATCTTCACTCCCATGGATTATTTTGTGAAGAACTCACTCCTGTCATTGCCTCCTCCTAGTGAAGTACCTAATGTGCTGAGCTTGACAAGCAGTTGTTCTTCGCTATCCTTAGCCGACAAGGATCTCGATGCTGAACTCAAGATGGAACTCAACGCTATCGACACACATTATCACCAGTTGTTCGAAGAGCTTTCTCGAATGAGAGAGGATTCACTAGAGTCCACCAGAAAGAGATGGATTGCAAAGAAGAAACTGATTCATTGA 1992 41.57 MESPDTAAEKDPTGRYVRYGEILGRGAFKTVYKAFDEVDGIEVAWNQVRIDGFLQSPEDLEKLYSEVHLLKSLKHDNIIKFYNSWVDDKKKTVNMITELFTSGSLRQYRKKHKHVDMKAIKNWARQVLRGLVYLHSHDPPIIHRDLKGDNIFINGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYSECKNPAQIFKKVTSGIKPASLAKVSDPLIMEFINKCLVPAQERLSAKELLKDSFLQVVNPKESAREPLRLPNQVPRSINLPKSGPISMDMDIDIDHKPHSLSTCAESNNGSLCFPVVEFQTMNKNNEFRLRGNKNDDNSVALTLRIADSNGRVRNIHFTFYLDSDTALSVAAEMAEHLELINHDVEFIAEFIDFLITKLIPGWKPLAVYSSNGELSLCSGPPILKSAKSSIASPWDSMSTVIHDVLVEQDFSSGLVISPQKDFLQSEGDGWPDDIPNHIFDTCPSSPSLANFEGLNSHASFASELLVEGEDCSTKSAKVIDCSNIDGSSKGSSWSIAELDQLHGSSYVEQRNVSDIGIFTPMDYFVKNSLLSLPPPSEVPNVLSLTSSCSSLSLADKDLDAELKMELNAIDTHYHQLFEELSRMREDSLESTRKRWIAKKKLIH 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 70950067 70953980 + Hsped.05g20420.1 Hepe05g2042 571307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g2042 663 Gene3D - 357 421 - -
Hepe05g2042 663 Gene3D Transferase(Phosphotransferase) domain 1 100 278 - -
Hepe05g2042 663 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Hepe05g2042 663 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 359 415 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Hepe05g2042 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe05g2042 663 FunFam probable serine/threonine-protein kinase WNK9 100 279 - -
Hepe05g2042 663 SUPERFAMILY Protein kinase-like (PK-like) 18 318 IPR011009 -
Hepe05g2042 663 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 6 651 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Hepe05g2042 663 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g2042 663 FunFam Probable serine/threonine-protein kinase WNK1 2 98 - -
Hepe05g2042 663 ProSiteProfiles Protein kinase domain profile. 17 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g2042 663 SMART serkin_6 17 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g2042 663 CDD STKc_WNK 15 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g2042 Hepe-Chr5:70950067 Hepe06g1447 Hepe-Chr6:65035686 4.12e-213 dispersed
Hepe05g2042 Hepe-Chr5:70950067 Hepe09g1530 Hepe-Chr9:40128449 7.54e-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72848 PF00069 Pkinase 6.70E-53 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g2042 K08867 - csv:101204101 1112.06