Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g2063 ATGAACGTGAAAACTCCGGCGACGAGGACTCGTGTTGGGAAGTACGAGCTTGGTAAAACTCTCGGCGAGGGCACTTTTGCTAAGGTCAAGTTCGCCAAAAACGTTGAGAATGGTAATTATGTTGCCATCAAGATTCTTGATCGTGAACAAGTTCTTCGCCACAAGATGGTCGAACAGTTAAAAAGAGAGATTTCGACTCTGAAAGTTATAAAGCATCCGAATGTTGCTAAGATTTATGAGGTTATGGCAAGCAAATCAAAGATCTACATTGTTCTTGAGTTTGTGGATGGAGGCGAGCTCTTTGACAAAATAGCTGCAAAGGGAAGGCTTAAAGAGGACGAGGCAAGGAAATATTTCCAGCAACTTATTAATGCTGTAGATTACTGCCATAGTAGAGGCGTGTACCATCGAGATCTGAAGCCTGAAAATCTTCTTCTGGACTCACATGATGTTCTTAAAGTATCAGATTTTGGATTGAGTGCATTTTCGCAGCAAGTACGGGGGGATGGTCTTCTTCACACTGCCTGTGGGACCCCAAACTACGTAGCTCCTGAGGTCTTCCATGATAAAGGTTATGATGGTACATCATCTGATATTTGGTCATGCGGGGTCATTCTCTTTGTTCTTATGGCCGGCTTCTTGCCTTTCGACGAGCCAAATCTAATGATTTTGTATAAAAAAATTTCCAAGGCTGATTTCTGCTTTCCATCATGGTTCTCAAATGGTGCAAAAAAACTAGTTCACCGCATTCTTGATCCAAACCCTCTTACTCGAATAACGATAGCTCAAATTCAAGAAGATGCATGGTTCAAGAAGGACTACACACCCGCTCAATTTCAGGTGGAAGAGGATATAACTCTCGATGATGTTGATGCTGCTTTTAGCAGCTCGAGGGAACATCATCTTGTAACCGAAAGAAAAGAGAAGCCAGTGTCCATGAATGCATTTGAGCTTATCTCTAGGTCACCAGGTTTCAGTCTTGAAAATCTATTTGAGAAGCAGAAGGTACTTATATAG 1017 42.08 MNVKTPATRTRVGKYELGKTLGEGTFAKVKFAKNVENGNYVAIKILDREQVLRHKMVEQLKREISTLKVIKHPNVAKIYEVMASKSKIYIVLEFVDGGELFDKIAAKGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDSHDVLKVSDFGLSAFSQQVRGDGLLHTACGTPNYVAPEVFHDKGYDGTSSDIWSCGVILFVLMAGFLPFDEPNLMILYKKISKADFCFPSWFSNGAKKLVHRILDPNPLTRITIAQIQEDAWFKKDYTPAQFQVEEDITLDDVDAAFSSSREHHLVTERKEKPVSMNAFELISRSPGFSLENLFEKQKVLI 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 71115157 71121064 + Hsped.05g20630.1 Hepe05g2063 571328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g2063 338 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g2063 338 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g2063 338 CDD STKc_SnRK3 14 269 - -
Hepe05g2063 338 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Hepe05g2063 338 ProSiteProfiles NAF domain profile. 308 332 IPR018451 GO:0007165(InterPro)
Hepe05g2063 338 SMART serkin_6 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g2063 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe05g2063 338 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 331 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Hepe05g2063 338 SUPERFAMILY Protein kinase-like (PK-like) 12 301 IPR011009 -
Hepe05g2063 338 Gene3D Transferase(Phosphotransferase) domain 1 7 326 - -
Hepe05g2063 338 Pfam NAF domain 310 334 IPR004041 GO:0007165(InterPro)
Hepe05g2063 338 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Hepe05g2063 338 FunFam Non-specific serine/threonine protein kinase 8 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g2063 Hepe-Chr5:71115157 Hepe08g0038 Hepe-Chr8:288362 6.23e-166 dispersed
Hepe05g2063 Hepe-Chr5:71115157 Hepe07g1747 Hepe-Chr7:59864705 2.93e-167 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72849 PF00069 Pkinase 1.80E-70 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g2063 - - - 0.0