Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe05g2068 | ATGAGCGGGAGAGACGACGACTTAGGCCTCAGTTTGAGTTTAGGGTTTCCACTTCAACCTTCTTTTCAGAGGCCCTCCAACTCCATGCATAATCATCATCATCTCCGCAAGACTTCTTGGAATGACCTCTTTCAATTTCCTGATCGAAACGCCGATTCGAGGTCGTTTCTCAGGGGAATCGATGTGAATCGGCTGCCGACGGCCGTGGACGGCGAGGAAGAGAACGGCGTTTCGTCTCCAAACAGTACGATTTCCAGCATCAGTGGAAAGAGGAGCGAGAGAGAAGCGATCGGATCAGACGATGCGGAGGCGGAGGCTGAAGCGGAGGCCGAGAGAGCGTCGTGCTCACGAGGCAGCGACGATGAAGACGGAGGCGGCGACGGCGACGCCTCGAGAAAAAAGCTTAGGCTATCGAAGGAACAGTCGTTGGTTCTTGAGGAAACCTTCAAAGAGCACAATACGCTCAATCCTAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAGTTGAAGCAGACAGAAGTGGATTGTGAGTACTTGAAGAGGTGTTGTGAGAATCTAACAGAGGAAAACAGAAGGCTACAGAAGGAGGTGCAAGAGTTAAGAGCACTCAAGCTTTCTCCACAGCTTTATATGCATATGAATCCTCCTACCACACTCACCATGTGCCCTCAGTGTGAGCGTGTGGCCGTTTCCTCGTCTTCTTCGACCTCGGCTGCTCCATCCCGCCATCCGGCAGCGGCTGGTGTGCAGCGTCCCTCGATGACCAACCCGTGGGCGACAATTGAAGATAATGTCTTCAGAATAACGGGAAAGGAAAACGGCCATGTTTTAGCGTTTTCCGCCATTGTAGTTGCAGAAGCTATGCTTATTACTTGCTCAACGCCCTCTCTTTCCTCTGGCCAATCTCTTCCTTACAGGGCGTTTTCAGCATGTGCAATATCAAGAGCTTTCATAACTCAAAACAAGCAAGTTCAGCGCTACTGCTCCTGTCATAGTTTCAATCATAGCAGGGGAGAGAGTTCGTATATATCATTATCAGATGAGAATTCCAGGCGAAAGATTCTTGTATTTTTCTTATCAACTACAGTTTTATTTCCATCTTGGCATTCTTCTGCCAAGACAAAGAGTAACAATCCATATGACGAGAGACGCTTACTAGAGCAAAACAAACGGAGGCAAAGAGAAAACAATGCACCTGATGACTTTCCAAGTTTTGTCAGAGAAGGTTTTGAGGTTAAGGTAGTAGCACCAGAGACCTATGTAAAACGTGACTCTGGACTCATATATTGGGATATTGAAGTTGGTAATGGTGATTTCCCCAAGGATGGTCAGCAGGTGACTTTTCACTATATTGGCTACAATGAGTCTGGTCGTCGAATTGACAGCACATACTTACAGGGTTCTCCCGCCAAAATCCGTGTGGGCACTAATGGATTGGTCCCAGGATTTGAGGAAGGAATTCGAGGCATGAGACCAGGGGGAAAGAGGAGAATAATAATTCCACCAGAACTTGGACCACCGGTGGGGCCTTCCACATTCTTCAGCGCAAAGCAGTTTGAAGTTTTTGATGTGGAATTGTTAAACGTCAAGGATTGTGAGAGGAGGACAATAGGCTTTTACTCTGATATTGTTTGCAGCTAG | 1695 | 47.67 | MSGRDDDLGLSLSLGFPLQPSFQRPSNSMHNHHHLRKTSWNDLFQFPDRNADSRSFLRGIDVNRLPTAVDGEEENGVSSPNSTISSISGKRSEREAIGSDDAEAEAEAEAERASCSRGSDDEDGGGDGDASRKKLRLSKEQSLVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTSAAPSRHPAAAGVQRPSMTNPWATIEDNVFRITGKENGHVLAFSAIVVAEAMLITCSTPSLSSGQSLPYRAFSACAISRAFITQNKQVQRYCSCHSFNHSRGESSYISLSDENSRRKILVFFLSTTVLFPSWHSSAKTKSNNPYDERRLLEQNKRRQRENNAPDDFPSFVREGFEVKVVAPETYVKRDSGLIYWDIEVGNGDFPKDGQQVTFHYIGYNESGRRIDSTYLQGSPAKIRVGTNGLVPGFEEGIRGMRPGGKRRIIIPPELGPPVGPSTFFSAKQFEVFDVELLNVKDCERRTIGFYSDIVCS | 564 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 71174832 | 71185817 | - | Hsped.05g20680.1 | Hepe05g2068 | 571333 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe05g2068 | 564 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 461 | 548 | IPR001179 | GO:0003755(InterPro) | |
| Hepe05g2068 | 564 | MobiDBLite | consensus disorder prediction | 74 | 92 | - | - | |
| Hepe05g2068 | 564 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Hepe05g2068 | 564 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 457 | 523 | IPR001179 | GO:0003755(InterPro) | |
| Hepe05g2068 | 564 | ProSiteProfiles | 'Homeobox' domain profile. | 128 | 188 | IPR001356 | GO:0003677(InterPro) | |
| Hepe05g2068 | 564 | SMART | HOX_1 | 130 | 192 | IPR001356 | GO:0003677(InterPro) | |
| Hepe05g2068 | 564 | Pfam | Homeodomain | 132 | 186 | IPR001356 | GO:0003677(InterPro) | |
| Hepe05g2068 | 564 | ProSitePatterns | 'Homeobox' domain signature. | 163 | 186 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
| Hepe05g2068 | 564 | Pfam | HD-ZIP protein N terminus | 1 | 95 | IPR006712 | GO:0005634(InterPro) | |
| Hepe05g2068 | 564 | Coils | Coil | 194 | 224 | - | - | |
| Hepe05g2068 | 564 | Pfam | Homeobox associated leucine zipper | 188 | 222 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Hepe05g2068 | 564 | SMART | halz | 188 | 231 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Hepe05g2068 | 564 | SUPERFAMILY | Homeodomain-like | 120 | 189 | IPR009057 | - | |
| Hepe05g2068 | 564 | SUPERFAMILY | FKBP-like | 359 | 548 | - | - | |
| Hepe05g2068 | 564 | MobiDBLite | consensus disorder prediction | 108 | 135 | - | - | |
| Hepe05g2068 | 564 | Gene3D | - | 423 | 554 | IPR046357 | GO:0003755(InterPro) | |
| Hepe05g2068 | 564 | CDD | homeodomain | 132 | 189 | IPR001356 | GO:0003677(InterPro) | |
| Hepe05g2068 | 564 | MobiDBLite | consensus disorder prediction | 69 | 135 | - | - | |
| Hepe05g2068 | 564 | CDD | bZIP | 181 | 220 | - | - | |
| Hepe05g2068 | 564 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP20-2, CHLOROPLASTIC | 308 | 564 | IPR044239 | - | |
| Hepe05g2068 | 564 | Gene3D | - | 136 | 186 | - | - | |
| Hepe05g2068 | 564 | FunFam | Homeobox-leucine zipper protein 18 | 118 | 193 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe05g2068 | Hepe-Chr5:71174832 | Hepe06g1115 | Hepe-Chr6:59825483 | 3.47e-81 | dispersed | |
| Hepe05g2068 | Hepe-Chr5:71174832 | Hepe05g0516 | Hepe-Chr5:7049597 | 9.55e-55 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 55701 | PF04618 | HD-ZIP_N | 2.60E-28 | No_clan | Hepe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe05g2068 | - | - | - | 0.0 |