Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g2086 ATGCCACATTTCCACCATTATTCACTTTTCTTTGCTGCCCTTATTTTTCTTTCACTCACCCCTTGCTTTTCCTTCCATCCCAAATTCTTTAATGTGTCCCACTACGGTCAGTCATATGATTCCGATTGGTCCCCGGCCGTCGCCACCTGGTATGGTAGCCCTGACGGTGCCGGAAGCGATGGAGGTTCATGTGGATATGGAAAAGCAGTGGGACAACCGCCATTTTCGTCGTTAATCACGGCGGGAGGTCCTTCCTTATACAAATCTGGAAAAGCCTGTGGAGCTTGTTATCAGGTGAAATGTTCGGGACAAAGCGCATGCTCAGGGAATCCAGTAACAGTGGTTATGACGGATAGTTGTCCTGGCGGCTCTTGTGCTTCCGATGCCGTCCACTTCGACCTCAGCGGCACTGCTTTTAGTGCTATGGCTGCACCTGGCCGTGCCGATGAACTCCGCAACCTCGGCGTTTTGCAGATTCAACATAAGAGGGTGGAATGCAATTATCCAGGAATTTCAATCAACTTCATGGTGGACTCGGGGTCGAACCCGAACTATTTTGCAGCTCTGATCGAATACGAAAATGGAGATGGAGATCTCGGTTCAGTGGAGCTGAAACAGGCGCTGGACTCGTACACATGGATTCAAATGAAGCAGTCATGGGGCGCTGTGTGGAAGTTGGACTATGGCTCCGCCCTTCAAGCTCCTTTCTCCCTCAGGCTCACCGCCCTCGACTCCGGCAAGACCGTGGTCGCTAACAACGTAATTCCAGTCGGGTGGCAGCCGGGGCAGACTTATAGATCAGTGGTCAACTTCGATAATTAA 822 51.09 MPHFHHYSLFFAALIFLSLTPCFSFHPKFFNVSHYGQSYDSDWSPAVATWYGSPDGAGSDGGSCGYGKAVGQPPFSSLITAGGPSLYKSGKACGACYQVKCSGQSACSGNPVTVVMTDSCPGGSCASDAVHFDLSGTAFSAMAAPGRADELRNLGVLQIQHKRVECNYPGISINFMVDSGSNPNYFAALIEYENGDGDLGSVELKQALDSYTWIQMKQSWGAVWKLDYGSALQAPFSLRLTALDSGKTVVANNVIPVGWQPGQTYRSVVNFDN 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 71374530 71376637 + Hsped.05g20860.1 Hepe05g2086 571351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g2086 273 Gene3D - 169 271 IPR036749 -
Hepe05g2086 273 Pfam Lytic transglycolase 80 159 IPR009009 -
Hepe05g2086 273 SUPERFAMILY PHL pollen allergen 173 267 IPR036749 -
Hepe05g2086 273 Pfam Expansin C-terminal domain 173 256 IPR007117 -
Hepe05g2086 273 SMART dpbb_1 79 161 IPR007112 -
Hepe05g2086 273 Gene3D - 27 167 IPR036908 -
Hepe05g2086 273 SUPERFAMILY Barwin-like endoglucanases 34 170 IPR036908 -
Hepe05g2086 273 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576(InterPro)
Hepe05g2086 273 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576(InterPro)
Hepe05g2086 273 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576(InterPro)
Hepe05g2086 273 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Hepe05g2086 273 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576(InterPro)
Hepe05g2086 273 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576(InterPro)
Hepe05g2086 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 171 IPR007112 -
Hepe05g2086 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 267 IPR007117 -
Hepe05g2086 273 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe05g2086 273 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe05g2086 273 PRINTS Major pollen allergen Lol pI signature 222 239 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe05g2086 273 PRINTS Major pollen allergen Lol pI signature 121 136 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe05g2086 273 PRINTS Major pollen allergen Lol pI signature 81 92 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe05g2086 273 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe05g2086 273 PANTHER EXPANSIN-B3 16 272 - -
Hepe05g2086 273 CDD DPBB_EXPB_N 43 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0873 Hepe-Chr3:30419068 Hepe05g2086 Hepe-Chr5:71374530 1.69e-160 dispersed
Hepe03g0874 Hepe-Chr3:30471679 Hepe05g2086 Hepe-Chr5:71374530 1.19e-160 dispersed
Hepe03g0877 Hepe-Chr3:30505710 Hepe05g2086 Hepe-Chr5:71374530 5.55e-120 dispersed
Hepe05g2086 Hepe-Chr5:71374530 Hepe08g0533 Hepe-Chr8:4667513 1.65e-72 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g2086 - - - 0.0