Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g2107 ATGGAGAGGCTCCAAGGACGACCCATTAATCCTTGCTTTTTGGATTTGGAATTTGAAGATTTAGAAGAAGCGTATTTGTTAACATCAAGTTTTTTGGAAGACAAAATGCCATTTCTTCAGATGCTTCAGCAAGTGCAGACGCCTACTCCTCCTCCTCCTCCTCCTCCTCCTCCACCGGTCACCAAATTAGAAAGAAGAAAACGAAAGAGAAGCAGACCCATTAGTAAGAACAAGGAAGAAGTGGAGAGCCAAAGAATGACCCATATTGCCGTAGAGCGCAACCGTAGACGCCAAATGAACGACCATCTCAACGTTATCAAGTCCCTCATACCAACCGCCTATATACAAAGGGGAGATCAGGCATCCATAATTGGGGGTGCAATAGACTTCGTGAAGGAATTGGAGCAGCTACTTGAATGTTTGGAAGCACAGAGGAAATTGGGATTTGGAAAGGAGGAGGAGCAATCACAGTCACCCACATCCTCCTCAGCAATAATCTCAGGCTCAAATGGTAATAATGGGTTTTGTGCAGAGCTCAAGTCAGAAGTGGCTGAGATAGAGGTGACCATGATTCAAACCCATGTTAACTTGAAGATTAAATGCCCCAAAACCCAAGGCCAATTGTTGAAAGCCATTGTTGCTTTGGAAGATCTAAGCCTCACAGTTTTGCATCTCAACATTACTACTACTACTACTTCAACTCCTACCATGCTTTACTCCTTCAATCTAAAGATAGAAGATGAATGTAAGCTAGGATCAGCGGAGCAGATTGCAGCAACAGTTCATCAAATATTAAGTTTTATCAACGATGGCAGACTGGTCAATGAGGTGAAGGCAAATTTCAGGCAGTACAACAGTGGCAGTCGCTGA 870 43.56 MERLQGRPINPCFLDLEFEDLEEAYLLTSSFLEDKMPFLQMLQQVQTPTPPPPPPPPPPVTKLERRKRKRSRPISKNKEEVESQRMTHIAVERNRRRQMNDHLNVIKSLIPTAYIQRGDQASIIGGAIDFVKELEQLLECLEAQRKLGFGKEEEQSQSPTSSSAIISGSNGNNGFCAELKSEVAEIEVTMIQTHVNLKIKCPKTQGQLLKAIVALEDLSLTVLHLNITTTTTSTPTMLYSFNLKIEDECKLGSAEQIAATVHQILSFINDGRLVNEVKANFRQYNSGSR 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 71655365 71657046 - Hsped.05g21070.1 Hepe05g2107 571372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g2107 289 SMART finulus 89 140 IPR011598 GO:0046983(InterPro)
Hepe05g2107 289 SUPERFAMILY Formin homology 2 domain (FH2 domain) 50 59 - -
Hepe05g2107 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 134 IPR011598 GO:0046983(InterPro)
Hepe05g2107 289 PANTHER TRANSCRIPTION FACTOR FAMA 65 267 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Hepe05g2107 289 Gene3D - 74 162 IPR036638 GO:0046983(InterPro)
Hepe05g2107 289 MobiDBLite consensus disorder prediction 45 86 - -
Hepe05g2107 289 Pfam Helix-loop-helix DNA-binding domain 84 135 IPR011598 GO:0046983(InterPro)
Hepe05g2107 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 153 IPR036638 GO:0046983(InterPro)
Hepe05g2107 289 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1364 Hepe-Chr4:69286540 Hepe05g2107 Hepe-Chr5:71655365 1.93e-06 dispersed
Hepe05g2107 Hepe-Chr5:71655365 Hepe06g1782 Hepe-Chr6:68896549 3.69e-49 dispersed
Hepe05g2107 Hepe-Chr5:71655365 Hepe05g1757 Hepe-Chr5:67888506 3.12e-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55708 PF02711 Pap_E4 0.00057 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g2107 - - - 0.0