Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0015 ATGAGGAGAGGGAGAGGGGCACCGGCGGCGGCGCCTACGACGGAGCGTGAGCCTGCAACAACCGGATCGGATCGGAGATACAGGGGAGTTCGAAAAAGGCCATGGGGGAGATTTGCGGCGGAGATCAGAGACCCTTGGAAGAAGACCAGAGTTTGGCTTGGCACTTTCGATTCCGCCGAGGACGCCGCCCGTGCTTACGATTCCGCCGCCGTAACCCTCCGTGGTCCCAAAGCTAAAACGAATTTCCCCCTCCCCAATCCAACCTCGTTTTTCGATTACCCTCCCTCCGTCAACGCTCCAGATCCCCGATTTGAAATTAACCCTAACAGACCCACTTCCAGCAGTCTCAGCTCCACCGTCGACTCCTTCAGCGAGCCCCGCCCTCCCTCTACCACCGCCGCCTCCTCTCGCCGCTACCCCCGCACGCCACCCCTCGTCCCAGAAGATTACCATAGCGACTGCGACTCCTCCTCCTCCGTCATCGACGACGGCGATATCGCGTCCTCCTCCGTCATTTCGTATCGGAAACCCCCTCTGCCTTTCGATCTCAACATTCCGCCGTTGGATCATCTTGATTTTGCCGCCGATGATCTTCGATGTACCGCCTTGTGCCTCTGA 618 59.22 MRRGRGAPAAAPTTEREPATTGSDRRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDSAAVTLRGPKAKTNFPLPNPTSFFDYPPSVNAPDPRFEINPNRPTSSSLSSTVDSFSEPRPPSTTAASSRRYPRTPPLVPEDYHSDCDSSSSVIDDGDIASSSVISYRKPPLPFDLNIPPLDHLDFAADDLRCTALCL 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 466507 467124 + Hsped.06g00150.1 Hepe06g0015 571390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0015 205 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 162 - -
Hepe06g0015 205 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g0015 205 PIRSF PTI6 144 201 IPR017392 GO:0003700(InterPro)
Hepe06g0015 205 PIRSF PTI6 8 91 IPR017392 GO:0003700(InterPro)
Hepe06g0015 205 SMART rav1_2 26 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g0015 205 CDD AP2 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g0015 205 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g0015 205 Pfam AP2 domain 26 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g0015 205 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677(InterPro)
Hepe06g0015 205 MobiDBLite consensus disorder prediction 93 159 - -
Hepe06g0015 205 MobiDBLite consensus disorder prediction 1 28 - -
Hepe06g0015 205 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g0015 205 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g0015 205 MobiDBLite consensus disorder prediction 107 138 - -
Hepe06g0015 205 FunFam Ethylene-responsive transcription factor 2 25 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0071 Hepe-Chr2:841414 Hepe06g0015 Hepe-Chr6:466507 6.01e-60 dispersed
Hepe06g0015 Hepe-Chr6:466507 Hepe08g0590 Hepe-Chr8:5197278 1.90e-60 dispersed
Hepe10g1428 Hepe-Chr10:50939558 Hepe06g0015 Hepe-Chr6:466507 3.22e-21 dispersed
Hepe05g0776 Hepe-Chr5:17887125 Hepe06g0015 Hepe-Chr6:466507 1.69e-37 transposed
Hepe02g1946 Hepe-Chr2:33659694 Hepe06g0015 Hepe-Chr6:466507 3.57e-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55709 PF00847 AP2 2.40E-13 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0015 K09286 - csv:101219993 267.7