Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0022 ATGGACGAATCCCCCACTCCCACCGCCGAGAACCGCCCAATTCCGATTCACCAAGACGATGAACCCTTGTCCAAGAAGCCCCGTAACGCTCCCGACTTGGCTCCTAATCTCCGAAGGGTTGCGGAGATTGTCTTGGTCATGTCCACAATGACGGCGCTCCGTGCTGCTAACAACCCCACCGATGCCGAGCTTCACTTGATGGCTGAGGCTAGGGCTAAGCTCGTTCAGATCTGTCACGGTTTCTCTCCCAAGGATATTGTTGGCAGGGAAGGTATTACCTCTCTCATTCAGGAATTGGGCCTTCATTCCAAGCCTAGGGATCACAACTTAGGGTTTCGCCCTCCCAGGTTGACCATAGCCGACAAATGTGCCCAGGCAAACAAGAAGATGGAAGATTCCAAGAAATATATTCCACCGTCAGGTTATGGATCTCACCAAACCCAAACAAACTTCACTTCATCGGTTGAGAGCCGTGGGGTATTGCCCACTGTACGGATGTTTCCCTCAGATAAATCAAGTCATGTCCCGACTTCTGTGGGAGGCACTGCAGCTGTTCTGCCTTCAGGTCATGTTTCTGTCGCTGGTTCTACATCTATACAGGTTCAAGCGCAACTACCAAGCAATGAAGTCAGAACACATATTATTTCAAGTGGATTTCCTATGAGTCATCAAGGAAGGGATTCTTCCTCGCTCGTGCATGGCATTGAAAGACCACTAAATGGGACGTATGGATCTCAAATGCAAGTTAATTCTTCAGTAAATCCTCTGGCGAATTCTTCAGTAAATCACCCTCTGGCGAATGCTCCAACTTGGTCTGTTCAAGTTCAATCCAGCTTGTCAGCTAAAGGTGTGCCAGAACACAAGTTGCCAAATCATTATGCTGTTAATGCTCAGGGAAGCACAGACTCGAGAACGTTAAGATCGTCTTCTCAACCAGAAAAGGACCAGAGCTTTAGACCTCCAATTTCTCAAACAGTGACAGGAAATATAACTGGTTTGCAGCCACATTTACAGAGTATGAACTTTGTGCAAGGACCTTCACTTTCTAATAACCACAGTGAAATTGTCAAAATTATTCAGAAGCTGTTACAGCCACAGCTTCCAGATCATCCTACATGGAATCCTCCTTCTAGAGATTACATGAACAAGGCTGTGACTTGCCAAACTTGTCAAGTTACCATTAATGAGATTGATAGTGTACTTATATGCGATGCTTGTGAGAAAGGATTTCACTTGAAATGTGTACAGTCACCTAATCAGAGAGCAATTCCTAGAGGGGAATGGCACTGCCCAAGATGTTTAACTATAAGCAATGGGAAGCCTTTACCTCCTAAATATGGGCGTGTCATGAGGAGTAACCCCCCACCAAAATTATCTGTCAATACCAGTGGAACTCAGCTATCAGAGAAGAGATTAGGAGTCATAGAACAAAAGGCCAGTGTTGGTCAGCTGAAGTTAATTTCTAATGGAGGTTCAGATTTGCAAAGTCCTCAGCCTGTTGACCATGGAAGCAATGCCAATGAATCATCTGGTACCAAAATTCCAGATGTGGAAGAAATTCATGGAAATCATTTTCTACCAATTAGGAAAGACATAGATGAGAAACCAACCTCTTCAACTTCCCTGAATGCCCCAGCCAAATCCTTGGAGCTGGTTTGTGACCCCTCTTCTGCTGATTTATCAGGTGAAAGATCTACTCAGCACATTAAAAGTTCTCCAGCTGACATAGGTGAAGATGGATCCTCATCGAAAGCAGAGCCTCCAGAAGAATCACAAACAGTGGCTGACAATTCTAGTAACCCTGAACCCCCTGACATTTTTCAAATTGTTGATCAGAAATTTGTTTCTAATAGTCCAGACAAACCCTACTCATCAGCAAGTGCTCATGACACTTCAAGTGTCAAGAAAGATGACCATGAAGTTCTGCAGGAAAGTAATGTTGAAAATTTTGAAGCTGGCATCATAAATAGAGAGCAGTCTGGGACTTCATCCGATGACTTGCGCGATGTTGAATGGATTGGAATGCCACATCAGGTTGCAGATGGGAGGGAATATTACAAATCCTGTAGCATTGATGGTGTTACATATAAAGTTGAAGAATTTGCTCTTTTTCATTCCAGCAATGGGAAATTGATGCCCTATAGGCTTCAGTCGATGTGCCGTGAGTTTGAAAGTGGGTCAAACTGGGCTGTTCTTAAGAAATGTTACTTTTATGAGGACTTGCCGAAGGAAGTTGAGCACCTCCGCCCGTGCTCCCCAGAACAAAATGAGGTATATACATCCGATGGCTACATTTGTTTAAACGTGGGCTTAATTCGAGGCCCATGTGAAATTCTTCCTGTTGCCAAGTATAAAGAAGAATATGAAAGACGAAGGCAATTGAGTCTTGGGGCAGATAATGGAGTAAAGCCAATTTTCCTGTGCAAATGGTTTTATAGTGAAGCTAAAAAGGAATTTGTACCTTTTACCGGTGCCGTCTGTGAAAACTTAACGGCGATTCAGGTAAATAACGAACTAAATAGTCCCCATTTAGATTGGTTTCTTCTGGTTTAG 2553 43.95 MDESPTPTAENRPIPIHQDDEPLSKKPRNAPDLAPNLRRVAEIVLVMSTMTALRAANNPTDAELHLMAEARAKLVQICHGFSPKDIVGREGITSLIQELGLHSKPRDHNLGFRPPRLTIADKCAQANKKMEDSKKYIPPSGYGSHQTQTNFTSSVESRGVLPTVRMFPSDKSSHVPTSVGGTAAVLPSGHVSVAGSTSIQVQAQLPSNEVRTHIISSGFPMSHQGRDSSSLVHGIERPLNGTYGSQMQVNSSVNPLANSSVNHPLANAPTWSVQVQSSLSAKGVPEHKLPNHYAVNAQGSTDSRTLRSSSQPEKDQSFRPPISQTVTGNITGLQPHLQSMNFVQGPSLSNNHSEIVKIIQKLLQPQLPDHPTWNPPSRDYMNKAVTCQTCQVTINEIDSVLICDACEKGFHLKCVQSPNQRAIPRGEWHCPRCLTISNGKPLPPKYGRVMRSNPPPKLSVNTSGTQLSEKRLGVIEQKASVGQLKLISNGGSDLQSPQPVDHGSNANESSGTKIPDVEEIHGNHFLPIRKDIDEKPTSSTSLNAPAKSLELVCDPSSADLSGERSTQHIKSSPADIGEDGSSSKAEPPEESQTVADNSSNPEPPDIFQIVDQKFVSNSPDKPYSSASAHDTSSVKKDDHEVLQESNVENFEAGIINREQSGTSSDDLRDVEWIGMPHQVADGREYYKSCSIDGVTYKVEEFALFHSSNGKLMPYRLQSMCREFESGSNWAVLKKCYFYEDLPKEVEHLRPCSPEQNEVYTSDGYICLNVGLIRGPCEILPVAKYKEEYERRRQLSLGADNGVKPIFLCKWFYSEAKKEFVPFTGAVCENLTAIQVNNELNSPHLDWFLLV 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 595016 600426 + Hsped.06g00220.1 Hepe06g0022 571397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0022 850 MobiDBLite consensus disorder prediction 487 605 - -
Hepe06g0022 850 MobiDBLite consensus disorder prediction 586 605 - -
Hepe06g0022 850 MobiDBLite consensus disorder prediction 646 665 - -
Hepe06g0022 850 Gene3D - 675 842 IPR043151 -
Hepe06g0022 850 Pfam PHD-finger 387 433 IPR019787 -
Hepe06g0022 850 MobiDBLite consensus disorder prediction 1 34 - -
Hepe06g0022 850 ProSiteProfiles BAH domain profile. 694 823 IPR001025 GO:0003682(InterPro)
Hepe06g0022 850 MobiDBLite consensus disorder prediction 559 578 - -
Hepe06g0022 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 448 IPR013083 -
Hepe06g0022 850 ProSiteProfiles Zinc finger PHD-type profile. 384 436 IPR019787 -
Hepe06g0022 850 Pfam BAH domain 694 822 IPR001025 GO:0003682(InterPro)
Hepe06g0022 850 ProSitePatterns Zinc finger PHD-type signature. 387 433 IPR019786 -
Hepe06g0022 850 CDD BAH 693 823 - -
Hepe06g0022 850 MobiDBLite consensus disorder prediction 514 536 - -
Hepe06g0022 850 SUPERFAMILY FYVE/PHD zinc finger 377 443 IPR011011 -
Hepe06g0022 850 MobiDBLite consensus disorder prediction 487 512 - -
Hepe06g0022 850 SMART PHD_3 386 434 IPR001965 -
Hepe06g0022 850 MobiDBLite consensus disorder prediction 295 329 - -
Hepe06g0022 850 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 7 823 - -
Hepe06g0022 850 MobiDBLite consensus disorder prediction 618 640 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0022 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0022 Hepe-Chr6:595016 Hepe08g1251 Hepe-Chr8:13334838 1.17e-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55710 PF00628 PHD 2.90E-08 CL0390 Hepe TR