Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0068 ATGGAACCTGAAGATAGTTTGTGTAGCTCTGAAGTTTGGACAAAATCTTCATCTTTTCCTAATATTAATGTTCAGCAACCTGCACAGAAATGGGTAGATACTTCCATTTTAGACTATGCTATGGAACAACCTTTTCAAGAATTTGAAGAACAGACCGAATCGAAGGCCTCCCTTACCTGTAGTCCGAATCAACAAATCGATATCCTAGATAAAGATAGTAATCAGATCGATGCAGCACTTCTAGCCAGTAAAATTCAAGATTGGGACCCGAGAGCGATGCTAAATAATCTCTCTTTCCTCGAGCAGAAGATTCATCAGCTTCAGGAACTTGTGCATTTGATCGTTGGCCGGAGGAGCCAAGTCTTGGGGAGGCCGGATGAACTCGTAGTTCAGCAACAGCAGCTGATAACTGCAGATCTGACTTCAATTATTGTTCAGTTAATCTCGACAGCGGGTAGTCTGCTTCCTTCTGTAAAGCATAACTTGTCTGCAGCTGTTCCTTCGGTTGGGCAGCTGGAGCAGCTCGACAGGGTTCTTTTCGCGTTTGGAGCCGGGACTAATAATGGTGCTGTTCAGTTACAACATGGTGATGGAACCAAACTTCCTGAGCTTCCAACGCAAATGGACGAAAGTAGCAAGTGTGGGAAGGAACAAAACATGACTGTTGAAGAACATGAATCAAAGGATGAAGAAGACGTCGATGAAAGCGAGAACCTCCCGCCCGGTTCGTATGAAATATTGCAGCTAGAAAAAGAAGAGATCCTAGCACCTCACACCCACTTCTGTGCAATATGTGGAAAAGGGTTCAAGAGGGATGCAAATTTACGAATGCACATGAGGGGTCACGGTGATGAGTACAAAACCGCAGCCGCTCTTGCAAAGCCGAACAAAGATCTGAGTTCCGAGACAATGCTAATTAAGAGGTATTCTTGCCCGTTCACCGGGTGCAAGCGGAACAAGGATCATAAGAAATTTCAGCCTCTGAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCATTGTGACAAAAGCTACATTTGCAGCAAATGCAACTCTAAGAAATTCTCAGTAATTGCTGATCTCAAAACACATGAGAAGCACTGTGGGAAAGATAAGTGGCTTTGTTCTTGTGGGACTACTTTCTCTAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTTTCGACGAATCGAAGGGAACAGCCATGTCCTGTGATCGAGGGGAACGCTATGAATCAACGAATAAGCTTGGGAGCATAAATTTCAGTTTCGGGTCGATTGCTTCGGGAGGAAGCTCGGTTGAAACCATAGCAGATGCAAAAGGAGGTGGTGTTGATGATCCTCTTAGTTATTTCTCGCCTCTGAACTTCGATACGTGTAATTTCGGTGGCTTTCACGAGTTTCCTCGACCGCCATTCGAGAACACAGAGAATGCATTTTCGTTCCTTATCCCGGCATCTAGCAATTACAACCAAAAATCTGGTGCAGAATCAAGTTCTAATAACCTGGAATGA 1545 44.21 MEPEDSLCSSEVWTKSSSFPNINVQQPAQKWVDTSILDYAMEQPFQEFEEQTESKASLTCSPNQQIDILDKDSNQIDAALLASKIQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRSQVLGRPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNLSAAVPSVGQLEQLDRVLFAFGAGTNNGAVQLQHGDGTKLPELPTQMDESSKCGKEQNMTVEEHESKDEEDVDESENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKDLSSETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPFDESKGTAMSCDRGERYESTNKLGSINFSFGSIASGGSSVETIADAKGGGVDDPLSYFSPLNFDTCNFGGFHEFPRPPFENTENAFSFLIPASSNYNQKSGAESSSNNLE 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2059868 2062827 - Hsped.06g00680.1 Hepe06g0068 571443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0068 514 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 56 493 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Hepe06g0068 514 SUPERFAMILY beta-beta-alpha zinc fingers 258 286 IPR036236 -
Hepe06g0068 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 287 IPR013087 -
Hepe06g0068 514 MobiDBLite consensus disorder prediction 193 240 - -
Hepe06g0068 514 SMART c2h2final6 309 342 IPR013087 -
Hepe06g0068 514 SMART c2h2final6 347 369 IPR013087 -
Hepe06g0068 514 SMART c2h2final6 260 282 IPR013087 -
Hepe06g0068 514 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
Hepe06g0068 514 Gene3D Classic Zinc Finger 244 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0068 Hepe-Chr6:2059868 Hepe10g0914 Hepe-Chr10:30748048 1.88e-73 dispersed
Hepe04g1432 Hepe-Chr4:69976306 Hepe06g0068 Hepe-Chr6:2059868 1.73e-75 transposed
Hepe06g0068 Hepe-Chr6:2059868 HepeContig66g0218 Hepe-ChrContig66:17594464 3.04e-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55711 None None None None Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0068 - - - 0.0