Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0086 ATGGCGGACGTGATGCTGATGAAGGAAATTGAGGACGCGGCTGATCGGCTTGGGATAGATCTTTCCCAAGTTGATTTTGATTCCATTCCTCTCCCTCCTGGCGAGGATTTCGGAATCATTAGCGATGATGAAGAGGTTATACAAGAGGAGAGTCTGGAGTTTGATTCTGGGTTTGGAAACATTATAGTTGTTGGCAATCTTCCGGTTGTTCCTGCGGAGAAGTTTGAGAAGCTTGAAGGTGTGGTTCGTAAAATTTTTGGACAGATTGGAGTTTTCAAGGATGATGGTTTGTGGATGCCTGTTGACCCAACTACACAGAAAACTTTAGGTTACTGCTTTATTGAGTATGGTACCCCACAGGAGGCTGAGCTTGCCAAAGAGAAGACTGATGGGTACAAGTTGGATAGAGCACACATTTTCACTGTTAACATGTTTGAGGACTTCAACAAATTTATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTAACCCATATAGTCCCGGGGAAAATCTGCAACAGTGGCTTACCGATGAAAAAGCACGGGATCAGTTTGTTATTCGTTCTGGTTCTGACACTGAGGTTTTCTGGAATGATGCTAGACATTTGAAGCCTGAGCCTGTCTACAAGCGTCCATACTGGACTGAGAGTTTTGTGCAGTGGTCCTCCTTGGGGACTTACCTAGCAACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCCGGTGAGAAATATCTGGTAACTTACAGCAGCCATGAGCCCAGCAATCCTTGTGATGCAAATAGGATTGTGCTCAATATTTTTGATGCGAGAACTGGAAAAGTAATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGTCACTGGAGGAACTGGTGGTGTTGCAGGCATATCATGGCCTGTTTTTAGGTGGGGTGGTGGGCAAGATGATAAATACTTCGCCAGGATTGGGAAGAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCTCTTATTGACAAAAAATCTTTGAAGGTTGAAAATGTCATGGATTTCTGCTGGTCCCCTACAGATCCCATTATTGCACTCTATGTTCCTGAGCTAGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTCGTTCAAATCCCCAGCAAGGAGGAATTGAGACAGAAAAATCTTTTCAGTGTCAGCGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATAGATATACAAAGACGAAGAAAAGCACGTACACAGGGTTTGAGCTATTCCGCATAAAAGAGCGGGATATTCCTATTGAAGTGTTGGAGCTTGAGAATAAGAATGACAAGATCATTGCATTTGCCTGGGAGCCGAAGGGGCATAGATTTGCAGTTATTCATGGTGACAACCCAAAGCCAGATATAAGCTTTTACTCTATGCGAAGCACTCAGAACAGTGGCCGAGTATCTAAACTTACAACTCTCAAAGGCAAGCAGGCCAATGCTCTATTCTGGTCACCTGCTGGACGCTTCATTATTCTTGCTGGACTGAAAGGTTTGAACGGACAGTTGGAATTCTACAACGTCGATGAGCTGGAGACAATGGCAACCACTGAGCATTTCATGGCTACTGATATAGAATGGGATCCTACTGGGAGGTATGTTGCAACTGCTGTAACATCAGTTCATGAGATGGAAAATGGTTTCAACATATGGTCCTTTAACGGAAAGCTCCTCTACCGAATATTGAAAGACCATTTCTTTCAGTTTGCATGGCGGCCGAGGCCACCATGCTTCTTGAGTCCCGAGAAAGAGGAAGAGATAGCGAAGAATTTGAAGAAGTACAGTAAGAAGTACGAGGCTGAAGATCAGGATGTATCTCTGCTACTGAGCGAGCAGGATCGCGAGAAACGGAGAATGTTGAAGGACGTATGGGACAAGTGGGTGAATGAATGGAAGAGATTGCATGAAGAAGAGAAGTTGTTGCGGCAGAAGCTGCGGGATGGCGAAGCCAGCGACAAAGAAGAGGAATACGAAGCCAAAGAGGTCGAAGTCGAAGAGATTTTGGACGTGTCGGAGGAAGTTTTGTCCTTTGATTTTGGGCAGGAGTGA 2160 45.0 MADVMLMKEIEDAADRLGIDLSQVDFDSIPLPPGEDFGIISDDEEVIQEESLEFDSGFGNIIVVGNLPVVPAEKFEKLEGVVRKIFGQIGVFKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFNKFMKVPDEWAPPEINPYSPGENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRPYWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPCDANRIVLNIFDARTGKVMRDFKGSPDDFVTGGTGGVAGISWPVFRWGGGQDDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALYVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDISFYSMRSTQNSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGLNGQLEFYNVDELETMATTEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPCFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQDREKRRMLKDVWDKWVNEWKRLHEEEKLLRQKLRDGEASDKEEEYEAKEVEVEEILDVSEEVLSFDFGQE 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2657853 2662422 - Hsped.06g00860.1 Hepe06g0086 571461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0086 719 SUPERFAMILY RNA-binding domain, RBD 56 142 IPR035979 GO:0003676(InterPro)
Hepe06g0086 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723(InterPro)
Hepe06g0086 719 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Hepe06g0086 719 PIRSF Transl_init_eIF3b 7 713 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Hepe06g0086 719 Gene3D - 410 625 IPR015943 GO:0005515(InterPro)
Hepe06g0086 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 36 708 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0006413(PANTHER)|GO:0031369(InterPro)
Hepe06g0086 719 CDD RRM_eIF3B 59 143 IPR034363 -
Hepe06g0086 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Hepe06g0086 719 Coils Coil 687 707 - -
Hepe06g0086 719 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Hepe06g0086 719 Gene3D - 55 154 IPR012677 -
Hepe06g0086 719 Gene3D - 175 383 IPR015943 GO:0005515(InterPro)
Hepe06g0086 719 SMART rrm1_1 61 143 IPR000504 GO:0003723(InterPro)
Hepe06g0086 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Hepe06g0086 719 FunFam Eukaryotic translation initiation factor 3 subunit B 411 626 - -
Hepe06g0086 719 Pfam RNA recognition motif 82 136 IPR000504 GO:0003723(InterPro)
Hepe06g0086 719 SUPERFAMILY DPP6 N-terminal domain-like 217 600 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0086 Hepe-Chr6:2657853 Hepe08g1747 Hepe-Chr8:32744103 0.0 dispersed
Hepe06g0086 Hepe-Chr6:2657853 Hepe08g1906 Hepe-Chr8:49781543 0.0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0086 K03253 - csv:101213144 1395.56