Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0141 ATGGAGATGGAGCAGTACAAGGTTTTGGCTTTGGGTTTCGTCTCTTTGATCTTGCTGCTTCCTCCACTATGGCTCGTTTCTGCTAACATGGAAGGTGATGCTTTGCATAGCCTAAGAACCAGCTTGCAGGATCCTAATAATGTGTTGCAGAGTTGGGATCCCACTCTTGTCAATCCTTGTACATGGTTTCATGTTACCTGCAATAATGATAATAGTGTCATAAGAGTTGATCTTGGAAATGCAGCTTTATCGGGCACACTTGTTCCACAGCTTGGGTTGCTAAAAAATTTGCAGTATCTAGAGCTCTACAGTAATAACATAAGTGGAGTAATTCCTAGCGATCTTGGGAATCTGACCAGTTTGGTGAGCTTAGATCTTTATTTGAACAGTTTTTCGGGTCCGATTCCAGACACATTGGGCAAGCTGTCAAAACTGCGATTCCTCCGGCTGAACAACAACAGCTTATCAGGTCCCATTCCTATGTCATTGACTAATATTTCATCCCTTCAAGTCTTGGATCTTTCGAATAACCATCTCTCAGGCGTGGTTCCAGATAATGGTTCCTTCTCCTTATTCACCCCCATCAGTTTTGCCAACAACTTGGACCTTTGTGGCCCTGTTACTGGACGTCCTTGCCCTGGTTCTCCTCCATTTTCGCCTCCTCCACCCTTTGTCCCACCACCGCCTATATCTTCACCAGGAGGGAATAGTGCAACTGGAGCTATTGCGGGTGGAGTTGCTGCAGGTGCTGCTTTACTTTTTGCAGCTCCAGCAATTGCATTTGCGTGGTGGCGTCGTAGGAAACCCCAAGAAGTTTTCTTTGACGTTCCTGCCGAAGAGGATCCTGAAGTGCATCTGGGACAGCTTAAAAGATTTTCACTGAGAGAACTACAAGTGGCAAGTGATACTTTTAGTAACAAGAACATACTTGGTAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCTGACGGTTCTTTAGTAGCCGTAAAAAGACTTAAGGAAGAACGTACGCCTGGTGGTGAGCTGCAATTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGGAACCTGCTACGACTACGTGGATTTTGCATGACACCAACTGAACGACTTCTTGTTTACCCCTACATGGCCAATGGAAGTGTTGCGTCTTGCTTAAGAGAACGACCACCATCCCAACCACCTCTTGATTGGAGAACAAGGAAGCGAATTGCGTTGGGATCTGCGAGAGGGCTGTCTTATTTGCATGATCACTGTGATCCAAAGATTATTCATCGTGATGTAAAAGCTGCAAATATTTTGCTGGATGAGGAGTTTGAAGCTGTTGTAGGGGACTTTGGGTTGGCCAAACTTATGGATTACAAAGATACTCATGTCACCACCGCGGTGCGTGGTACGATTGGACATATAGCTCCTGAGTACCTTTCCACCGGGAAATCTTCTGAGAAAACAGATGTTTTCGGGTACGGTATCATGCTTCTAGAGCTGATCACTGGACAAAGGGCTTTCGATTTGGCTCGACTTGCTAATGATGATGATGTCATGCTACTTGATTGGGTAAAAGGACTCCTGAAAGAGAAGAAGCTAGAAATGCTGGTTGATCCTGATCTTCAGAACAATTATATAGAATCCGAGGTAGAACAGTTGATTCAGGTTGCTCTGCTCTGCACACAAGGCTCCCCGATGGACAGACCGAAGATGTCCGAGGTGGTGAGAATGCTCGAAGGTGACGGTTTGGCAGAAAGATGGGACGAGTGGCAAAAGGTGGAAATCCTTCGGCAAGAAATCGATCTATCGCCTCATCCAAATTCCGATTGGATTGTCGATTCCACTGAAAATCTACACGCAGTTGAGCTTTCTGGTCCAAGATGA 1884 45.65 MEMEQYKVLALGFVSLILLLPPLWLVSANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNNISGVIPSDLGNLTSLVSLDLYLNSFSGPIPDTLGKLSKLRFLRLNNNSLSGPIPMSLTNISSLQVLDLSNNHLSGVVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVASDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWRTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYIESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEIDLSPHPNSDWIVDSTENLHAVELSGPR 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5131041 5140883 + Hsped.06g01410.1 Hepe06g0141 571516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0141 627 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Hepe06g0141 627 Gene3D Ribonuclease Inhibitor 27 214 IPR032675 -
Hepe06g0141 627 Pfam Leucine Rich Repeat 168 186 IPR001611 GO:0005515(InterPro)
Hepe06g0141 627 Pfam Leucine Rich Repeat 144 165 IPR001611 GO:0005515(InterPro)
Hepe06g0141 627 Pfam Leucine Rich Repeat 120 142 IPR001611 GO:0005515(InterPro)
Hepe06g0141 627 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515(InterPro)
Hepe06g0141 627 Gene3D Transferase(Phosphotransferase) domain 1 381 598 - -
Hepe06g0141 627 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 627 - -
Hepe06g0141 627 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Hepe06g0141 627 FunFam Somatic embryogenesis receptor kinase 1 273 380 - -
Hepe06g0141 627 SUPERFAMILY Protein kinase-like (PK-like) 283 579 IPR011009 -
Hepe06g0141 627 SMART serkin_6 304 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g0141 627 FunFam Somatic embryogenesis receptor-like kinase 1 381 598 - -
Hepe06g0141 627 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524(InterPro)
Hepe06g0141 627 Pfam Protein tyrosine and serine/threonine kinase 307 578 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe06g0141 627 SUPERFAMILY L domain-like 32 195 - -
Hepe06g0141 627 ProSiteProfiles Protein kinase domain profile. 304 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g0141 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe06g0141 627 FunFam Somatic embryogenesis receptor kinase 1 27 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0770 Hepe-Chr2:8495865 Hepe06g0141 Hepe-Chr6:5131041 5.33e-242 dispersed
Hepe06g0141 Hepe-Chr6:5131041 Hepe07g0324 Hepe-Chr7:3259241 1.55e-273 dispersed
Hepe03g1159 Hepe-Chr3:65129447 Hepe06g0141 Hepe-Chr6:5131041 2.36e-34 transposed
Hepe07g0661 Hepe-Chr7:7598954 Hepe06g0141 Hepe-Chr6:5131041 9.04e-46 transposed
Hepe09g1039 Hepe-Chr9:10797914 Hepe06g0141 Hepe-Chr6:5131041 1.01e-35 transposed
Hepe10g0900 Hepe-Chr10:28740608 Hepe06g0141 Hepe-Chr6:5131041 7.05e-40 wgd
Hepe02g2778 Hepe-Chr2:76376830 Hepe06g0141 Hepe-Chr6:5131041 3.92e-57 wgd
Hepe05g0652 Hepe-Chr5:10713298 Hepe06g0141 Hepe-Chr6:5131041 4.73e-06 wgd
Hepe06g0141 Hepe-Chr6:5131041 Hepe06g0588 Hepe-Chr6:43230643 4.29e-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72853 PF00069 Pkinase 9.20E-45 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0141 K13418 - csv:101208695 1124.38