Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0158 ATGTCCCGATCGCTGGTGCAGCCGATCGGACAGAAGAGGCTGACGAACGTCGCGGTGGTTCGTTTGAAGAGACATGGTCTTCGCTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTAGAGAAAGATTTGGATGAGGTATTGCAATCGCAAATTGTTTATTCAAATGTTTCAAAAGGAGTTCTTGCCAAAACAAAAGATTTAAAAGCAGCTTTTGGCACAGATGATCAGACGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATTGCAACCATTGTTATGCAGAAGACCTTCAATCCCGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGGCTCATGCGTGACATTCATTTTGCTGTTGATTCAAATCACAGCTCAAAGAAACAGGCACTAGAGGTCATTCATGAGCTCCAAAAACAGTTCCCTATTAAACGCTCACCTATGAGAATACGATATACCGTTCCTGAACTGAACTTTCCATCTCTCCTTGAGAAGTTAAATGCCTGGAATGCTAGCATCATTTCCGACGAACAGTCTGGAAATCAGCAGCAAACCGTTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCATTAATGACTGAACTACAAGGAAGATTTGAAGTTCTCTCTTTCTCTTTGCAAGAGGAAGGAGACACTAATGTGGATCAATATGATGACGATTATGAGAACGTTGAACTCCCACCCAAGCAAATCAAAGAGTCGTCCATTCCTCAGCTAAGTGAAGCTTTACAAAAACAGACAATCTCTGCTGATGGTGGAGATGTACCGAAGGAAGGGAAACGCTGCAATACATGTAACGTAGCTGTGGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAACATCAAGCGCAAAACCAAGAATCTTCCTCCCCTGATTGAAGAAGAGTGCATGGTTGAATTGGCAATGGGCGAATCGGAGTCTGACCTAAAAGACTATTCATTTTGA 1074 42.64 MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDSNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPELNFPSLLEKLNAWNASIISDEQSGNQQQTVICELDPSFYRDCNPLMTELQGRFEVLSFSLQEEGDTNVDQYDDDYENVELPPKQIKESSIPQLSEALQKQTISADGGDVPKEGKRCNTCNVAVGDATQFREHHKSEWHKHNIKRKTKNLPPLIEEECMVELAMGESESDLKDYSF 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5849614 5851546 - Hsped.06g01580.1 Hepe06g0158 571533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0158 357 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Hepe06g0158 357 FunFam SBDS, ribosome maturation factor 3 96 - -
Hepe06g0158 357 SUPERFAMILY beta-beta-alpha zinc fingers 290 327 IPR036236 -
Hepe06g0158 357 FunFam SBDS, ribosome maturation factor 100 172 - -
Hepe06g0158 357 Pfam SBDS protein, C-terminal domain 174 239 IPR046928 -
Hepe06g0158 357 Gene3D - 100 172 IPR037188 -
Hepe06g0158 357 NCBIfam ribosome assembly factor SBDS 13 230 IPR002140 GO:0042256(InterPro)
Hepe06g0158 357 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Hepe06g0158 357 ProSitePatterns Zinc finger C2H2 type domain signature. 298 320 IPR013087 -
Hepe06g0158 357 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Hepe06g0158 357 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 248 IPR039100 -
Hepe06g0158 357 Gene3D - 174 251 - -
Hepe06g0158 357 Gene3D - 1 96 IPR036786 -
Hepe06g0158 357 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Hepe06g0158 357 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0158 K14574 - csv:101215380 645.966