Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0203 ATGCATCAACACCTCTTTCGTCCCTGCAACTATAAGACTATAGAAACTGTTGCTGCTCATCTTGCCCCGAAAGCGCCATTGCTTCACAACTCTATCTCCTCATTATCCTCTCTTTACCAACCAGACTTAAATGTTCGCAACGAATCGAAAACTTCGATAAACAAGATAAATCATAAACAGTATGAAGTGCAACTAGATTTCTCAATTGGGTCTCCATGTAGGGTCCAAAAACACATTGCTTCCCAGTCTGATGCTCTTCTTGCTAAGGAAATTTTCGATTACGCTTGTCGTCAACCCCACTTTCGCTCATCTTCCTCCTCTTTGCTCATTCTTATCCTCAAGCTAGGGCGCTCCAAATACTTCTCTCTGATTGATGATCTTCTTCTTAGCTTCAGGTCTAGAGGTTACCCTGTCACTCCAACTGTCTTCTCGTACATAATCAAAAACTATGGCAAAGCTGATTTACCAAATAAAGCTCTCAAAACCTTTTATACTATGATCGAGTTTGGCTGTCAGCCTTCCTCCAAACAGTTGAACCGTATACTCGAAATTTTGGTTTCTCACCGTAACTTCATTCGATCAGCTTTCGATGTTTTCAAAAATGCTCGTCATCATGGAGTGTTGCCCAACACCAAATCTTACAACATCCTTTTGCGAGCATTTTGTTTGAATGGAGATCTTAGCATTGCCTACACACTGTTCAACAAAATGTTCGAACGAGATGTCGCTCCAGACGTCGAGTCGTACCGGATATTAATGCAGGCTCTCTGCAGGAAGAATCAAGTGAATGGTGCTGTTGATTTGCTAGAAGATATGTTAAACAAAGGCTACATTCCAGACACATTGAGCTATGCCACATTGTTGAATAGTTTATGTAGGAAGAAAAAGCTAAGGGAAGCTTATAAACTTCTCTGTAGAATGAAGGTTAAGGGTTGCAATCCTGACGTTGCTCATTACAATACAGTTATTATAGGGTTTTGTCGAGAAGGCTTGTGCTTGATTCTCTCTACAAAATTGCAGAATCAGAGAAGAAACCGCATACTTCGAAAGGGATTCTTCGTCTTGTATGACACCAGAGACGATCGAGAGAATTTTGATCCTAGTGCGCTCTTCTGGCAAGAAATTCTTGTTATAGAATGTTTTAGCGTTTCTCTCGAAACATCCTTACCTAAGTACAATGCTTTTGCAGTCCAAGTTGGCGGCTACTATGGCATCTTTCATCATTCAGAAACCTCGGCAAAGGTCACCTTTCATCAAAGCTGCTCTAAAAACGTCTTGAATCAGCTTGAAAGCATTGGTGCTCTTGAAGATTTTATGTTGAAACATCAAAAGGACTATGTAGATATGTATCGCACAACAGATCAAGAGAGAGACGATATTGAACAGGAGGTAACTGCCTTCATCAAAGCATGCCAAGAACAAATCGACATCCTAAAAAACAACATCAATGAGGATGAAGCACATTCAAAGGGCTGGCGTGGTGCTAGGACTGATGATGCTAATGCTGATACCATTGCACACAAACATGGGGTGGTTCTAATTTTGAGTGAGAAACTCCATTCGGTAACATCACAATTTGATAAGCTAAGAGCCATTCGGTTTCAAGATATCATAAACAAAGCAGTGCCAAGAAAAAAACTGAACCAAGTAAATAAACCACGTTCTGCAAATACCCCTGAATATAATAATACGGAGCTGAGGGAACCTAATAATTTTGAGCATCGACCTGTCCGAGCCCAACAGCAACTGTTGGATGATGAAACTCGTGCACTTCAGGTTGAGTTGACTAGTCTTCTTGACGTAGTCCAGGAAACAGAAACTAAGATGGTAGAGATGTCTGCTTTAAATCACCTTATGTCTACACACGTTTTGCAGCAAGCACAACAAATTGAATTTCTTTATGAACAGGCTGTTGAAGCTACGAAGAACGTCGAGCTCGGTAATAAAGAACTTACCCAAGCAATTCAACGGAATAGCAGCAGCAGAACCTTCCTTCTGCTTTTTCTATTTGTGCTCACGTTTTCAATTATCTTTCTTGATTGGTATAGTTGA 2052 40.59 MHQHLFRPCNYKTIETVAAHLAPKAPLLHNSISSLSSLYQPDLNVRNESKTSINKINHKQYEVQLDFSIGSPCRVQKHIASQSDALLAKEIFDYACRQPHFRSSSSSLLILILKLGRSKYFSLIDDLLLSFRSRGYPVTPTVFSYIIKNYGKADLPNKALKTFYTMIEFGCQPSSKQLNRILEILVSHRNFIRSAFDVFKNARHHGVLPNTKSYNILLRAFCLNGDLSIAYTLFNKMFERDVAPDVESYRILMQALCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLREAYKLLCRMKVKGCNPDVAHYNTVIIGFCREGLCLILSTKLQNQRRNRILRKGFFVLYDTRDDRENFDPSALFWQEILVIECFSVSLETSLPKYNAFAVQVGGYYGIFHHSETSAKVTFHQSCSKNVLNQLESIGALEDFMLKHQKDYVDMYRTTDQERDDIEQEVTAFIKACQEQIDILKNNINEDEAHSKGWRGARTDDANADTIAHKHGVVLILSEKLHSVTSQFDKLRAIRFQDIINKAVPRKKLNQVNKPRSANTPEYNNTELREPNNFEHRPVRAQQQLLDDETRALQVELTSLLDVVQETETKMVEMSALNHLMSTHVLQQAQQIEFLYEQAVEATKNVELGNKELTQAIQRNSSSRTFLLLFLFVLTFSIIFLDWYS 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7242585 7251222 - Hsped.06g02030.1 Hepe06g0203 571578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0203 683 Gene3D Tetratricopeptide repeat domain 42 190 IPR011990 GO:0005515(InterPro)
Hepe06g0203 683 Coils Coil 468 488 - -
Hepe06g0203 683 Pfam PPR repeat 142 171 IPR002885 -
Hepe06g0203 683 Pfam PPR repeat family 279 328 IPR002885 -
Hepe06g0203 683 Pfam PPR repeat family 209 258 IPR002885 -
Hepe06g0203 683 SUPERFAMILY t-snare proteins 419 647 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Hepe06g0203 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Hepe06g0203 683 FunFam Syntaxin-81 like 586 680 - -
Hepe06g0203 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Hepe06g0203 683 Gene3D - 587 680 - -
Hepe06g0203 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Hepe06g0203 683 NCBIfam pentatricopeptide repeat 283 316 IPR002885 -
Hepe06g0203 683 NCBIfam pentatricopeptide repeat 142 174 IPR002885 -
Hepe06g0203 683 NCBIfam pentatricopeptide repeat 213 246 IPR002885 -
Hepe06g0203 683 NCBIfam pentatricopeptide repeat 248 281 IPR002885 -
Hepe06g0203 683 PANTHER SYNTAXIN-18 416 683 - GO:0005783(PANTHER)|GO:0006890(PANTHER)|GO:0031201(PANTHER)
Hepe06g0203 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Hepe06g0203 683 Gene3D Tetratricopeptide repeat domain 191 351 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0203 K20291 - - csv:101214544 560.836
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3337 Hepe-Chr2:82957496 Hepe06g0203 Hepe-Chr6:7242585 6.31e-160 dispersed
Hepe03g0032 Hepe-Chr3:364476 Hepe06g0203 Hepe-Chr6:7242585 5.49e-10 dispersed
Hepe05g2077 Hepe-Chr5:71264225 Hepe06g0203 Hepe-Chr6:7242585 2.92e-10 dispersed
Hepe06g0201 Hepe-Chr6:7224108 Hepe06g0203 Hepe-Chr6:7242585 2.92e-149 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g0299 . 1 337 SNARE and Associated Proteins AT3G24350 62.8 1.6e-100 363.2
Hepe04g0635 . 1 309 SNARE and Associated Proteins AT1G08560 68.4 9.0e-100 360.5
Hepe04g1523 . 1 304 SNARE and Associated Proteins AT2G18260 54.2 2.3e-84 309.3
Hepe05g0449 . 19 279 SNARE and Associated Proteins AT3G11820 80.8 1.2e-115 413.3
Hepe04g1076 . 26 281 SNARE and Associated Proteins AT3G11820 73.0 1.5e-102 369.8
Hepe07g1958 . 21 281 SNARE and Associated Proteins AT3G11820 64.8 2.8e-93 339.0
Hepe02g2765 . 24 284 SNARE and Associated Proteins AT3G11820 50.6 2.4e-68 256.1
Hepe05g0449 . 1 279 SNARE and Associated Proteins AT3G52400 63.6 9.9e-92 334.0
Hepe04g1076 . 1 281 SNARE and Associated Proteins AT3G52400 60.1 4.8e-86 315.1
Hepe07g1958 . 1 281 SNARE and Associated Proteins AT3G52400 55.3 3.0e-80 295.8
Hepe07g1958 . 1 299 SNARE and Associated Proteins AT4G03330 66.6 4.8e-106 381.3
Hepe05g0449 . 1 279 SNARE and Associated Proteins AT4G03330 57.9 2.9e-82 302.4
Hepe04g1076 . 1 299 SNARE and Associated Proteins AT4G03330 51.3 2.1e-77 286.2
Hepe02g2765 . 1 284 SNARE and Associated Proteins AT4G03330 52.8 6.6e-71 264.6
Hepe07g1958 . 1 299 SNARE and Associated Proteins AT1G61290 78.9 1.7e-127 452.6
Hepe05g0449 . 1 279 SNARE and Associated Proteins AT1G61290 62.8 2.8e-90 328.9
Hepe04g1076 . 1 293 SNARE and Associated Proteins AT1G61290 56.3 1.0e-84 310.5
Hepe07g1958 . 1 299 SNARE and Associated Proteins AT1G11250 76.3 9.5e-123 436.8
Hepe05g0449 . 1 279 SNARE and Associated Proteins AT1G11250 62.4 2.3e-92 335.9
Hepe04g1076 . 1 290 SNARE and Associated Proteins AT1G11250 57.9 3.4e-88 322.0
Hepe02g2765 . 1 284 SNARE and Associated Proteins AT1G11250 50.7 5.5e-70 261.5
Hepe02g2765 . 1 307 SNARE and Associated Proteins AT3G03800 74.9 4.5e-120 427.9
Hepe08g0474 . 1 270 SNARE and Associated Proteins AT3G03800 59.3 2.7e-80 295.8
Hepe02g2765 . 1 202 SNARE and Associated Proteins AT5G08080 80.2 1.2e-82 303.1
Hepe08g0474 . 2 169 SNARE and Associated Proteins AT5G08080 62.5 1.4e-49 193.4
Hepe06g1000 . 1 256 SNARE and Associated Proteins AT5G16830 59.2 3.1e-75 278.9
Hepe06g1000 . 1 256 SNARE and Associated Proteins AT5G46860 65.6 4.0e-80 295.0
Hepe06g1000 . 1 256 SNARE and Associated Proteins AT4G17730 60.5 2.7e-73 272.3
Hepe06g1000 . 65 256 SNARE and Associated Proteins AT1G32270 59.4 8.5e-51 198.0
Hepe01g0729 . 1 334 SNARE and Associated Proteins AT5G05760 65.7 6.1e-110 394.4
Hepe10g0299 . 1 337 SNARE and Associated Proteins AT3G24350 62.8 1.6e-100 363.2
Hepe08g2281 . 1 327 SNARE and Associated Proteins AT5G26980 75.2 1.1e-124 443.4
Hepe03g1868 . 90 409 SNARE and Associated Proteins AT5G26980 65.8 2.4e-103 372.5
Hepe08g2281 . 1 329 SNARE and Associated Proteins AT4G02195 63.7 3.1e-103 372.1
Hepe03g1868 . 90 409 SNARE and Associated Proteins AT4G02195 64.9 6.9e-103 370.9
Hepe08g2281 . 1 328 SNARE and Associated Proteins AT3G05710 74.2 1.7e-125 446.0
Hepe03g1868 . 90 409 SNARE and Associated Proteins AT3G05710 63.1 1.6e-99 359.8
Hepe01g1245 . 1 233 SNARE and Associated Proteins AT1G16240 70.0 2.2e-87 318.9
Hepe01g1245 . 1 233 SNARE and Associated Proteins AT1G79590 70.0 5.7e-87 317.8
Hepe01g1268 . 56 246 SNARE and Associated Proteins AT1G28490 70.5 2.3e-64 242.3
Hepe05g0250 . 1 264 SNARE and Associated Proteins AT3G09740 80.5 3.6e-113 404.8
Hepe08g0878 . 1 262 SNARE and Associated Proteins AT3G09740 65.5 6.5e-91 330.9
Hepe05g0250 . 1 264 SNARE and Associated Proteins AT3G45280 65.2 3.6e-89 325.1
Hepe08g0878 . 1 262 SNARE and Associated Proteins AT3G45280 64.9 2.0e-87 319.3
Hepe05g0250 . 1 261 SNARE and Associated Proteins AT3G61450 67.8 9.6e-95 343.6
Hepe08g0878 . 1 262 SNARE and Associated Proteins AT3G61450 58.0 5.1e-80 294.7
Hepe06g0203 . 439 683 SNARE and Associated Proteins AT1G51740 73.2 3.2e-92 335.1
Hepe02g3337 . 65 306 SNARE and Associated Proteins AT1G51740 72.8 3.0e-90 328.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011412 0 3 1 1 0 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 30