Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0203 ATGCATCAACACCTCTTTCGTCCCTGCAACTATAAGACTATAGAAACTGTTGCTGCTCATCTTGCCCCGAAAGCGCCATTGCTTCACAACTCTATCTCCTCATTATCCTCTCTTTACCAACCAGACTTAAATGTTCGCAACGAATCGAAAACTTCGATAAACAAGATAAATCATAAACAGTATGAAGTGCAACTAGATTTCTCAATTGGGTCTCCATGTAGGGTCCAAAAACACATTGCTTCCCAGTCTGATGCTCTTCTTGCTAAGGAAATTTTCGATTACGCTTGTCGTCAACCCCACTTTCGCTCATCTTCCTCCTCTTTGCTCATTCTTATCCTCAAGCTAGGGCGCTCCAAATACTTCTCTCTGATTGATGATCTTCTTCTTAGCTTCAGGTCTAGAGGTTACCCTGTCACTCCAACTGTCTTCTCGTACATAATCAAAAACTATGGCAAAGCTGATTTACCAAATAAAGCTCTCAAAACCTTTTATACTATGATCGAGTTTGGCTGTCAGCCTTCCTCCAAACAGTTGAACCGTATACTCGAAATTTTGGTTTCTCACCGTAACTTCATTCGATCAGCTTTCGATGTTTTCAAAAATGCTCGTCATCATGGAGTGTTGCCCAACACCAAATCTTACAACATCCTTTTGCGAGCATTTTGTTTGAATGGAGATCTTAGCATTGCCTACACACTGTTCAACAAAATGTTCGAACGAGATGTCGCTCCAGACGTCGAGTCGTACCGGATATTAATGCAGGCTCTCTGCAGGAAGAATCAAGTGAATGGTGCTGTTGATTTGCTAGAAGATATGTTAAACAAAGGCTACATTCCAGACACATTGAGCTATGCCACATTGTTGAATAGTTTATGTAGGAAGAAAAAGCTAAGGGAAGCTTATAAACTTCTCTGTAGAATGAAGGTTAAGGGTTGCAATCCTGACGTTGCTCATTACAATACAGTTATTATAGGGTTTTGTCGAGAAGGCTTGTGCTTGATTCTCTCTACAAAATTGCAGAATCAGAGAAGAAACCGCATACTTCGAAAGGGATTCTTCGTCTTGTATGACACCAGAGACGATCGAGAGAATTTTGATCCTAGTGCGCTCTTCTGGCAAGAAATTCTTGTTATAGAATGTTTTAGCGTTTCTCTCGAAACATCCTTACCTAAGTACAATGCTTTTGCAGTCCAAGTTGGCGGCTACTATGGCATCTTTCATCATTCAGAAACCTCGGCAAAGGTCACCTTTCATCAAAGCTGCTCTAAAAACGTCTTGAATCAGCTTGAAAGCATTGGTGCTCTTGAAGATTTTATGTTGAAACATCAAAAGGACTATGTAGATATGTATCGCACAACAGATCAAGAGAGAGACGATATTGAACAGGAGGTAACTGCCTTCATCAAAGCATGCCAAGAACAAATCGACATCCTAAAAAACAACATCAATGAGGATGAAGCACATTCAAAGGGCTGGCGTGGTGCTAGGACTGATGATGCTAATGCTGATACCATTGCACACAAACATGGGGTGGTTCTAATTTTGAGTGAGAAACTCCATTCGGTAACATCACAATTTGATAAGCTAAGAGCCATTCGGTTTCAAGATATCATAAACAAAGCAGTGCCAAGAAAAAAACTGAACCAAGTAAATAAACCACGTTCTGCAAATACCCCTGAATATAATAATACGGAGCTGAGGGAACCTAATAATTTTGAGCATCGACCTGTCCGAGCCCAACAGCAACTGTTGGATGATGAAACTCGTGCACTTCAGGTTGAGTTGACTAGTCTTCTTGACGTAGTCCAGGAAACAGAAACTAAGATGGTAGAGATGTCTGCTTTAAATCACCTTATGTCTACACACGTTTTGCAGCAAGCACAACAAATTGAATTTCTTTATGAACAGGCTGTTGAAGCTACGAAGAACGTCGAGCTCGGTAATAAAGAACTTACCCAAGCAATTCAACGGAATAGCAGCAGCAGAACCTTCCTTCTGCTTTTTCTATTTGTGCTCACGTTTTCAATTATCTTTCTTGATTGGTATAGTTGA 2052 40.59 MHQHLFRPCNYKTIETVAAHLAPKAPLLHNSISSLSSLYQPDLNVRNESKTSINKINHKQYEVQLDFSIGSPCRVQKHIASQSDALLAKEIFDYACRQPHFRSSSSSLLILILKLGRSKYFSLIDDLLLSFRSRGYPVTPTVFSYIIKNYGKADLPNKALKTFYTMIEFGCQPSSKQLNRILEILVSHRNFIRSAFDVFKNARHHGVLPNTKSYNILLRAFCLNGDLSIAYTLFNKMFERDVAPDVESYRILMQALCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLREAYKLLCRMKVKGCNPDVAHYNTVIIGFCREGLCLILSTKLQNQRRNRILRKGFFVLYDTRDDRENFDPSALFWQEILVIECFSVSLETSLPKYNAFAVQVGGYYGIFHHSETSAKVTFHQSCSKNVLNQLESIGALEDFMLKHQKDYVDMYRTTDQERDDIEQEVTAFIKACQEQIDILKNNINEDEAHSKGWRGARTDDANADTIAHKHGVVLILSEKLHSVTSQFDKLRAIRFQDIINKAVPRKKLNQVNKPRSANTPEYNNTELREPNNFEHRPVRAQQQLLDDETRALQVELTSLLDVVQETETKMVEMSALNHLMSTHVLQQAQQIEFLYEQAVEATKNVELGNKELTQAIQRNSSSRTFLLLFLFVLTFSIIFLDWYS 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7242585 7251222 - Hsped.06g02030.1 Hepe06g0203 571578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0203 683 Gene3D Tetratricopeptide repeat domain 42 190 IPR011990 GO:0005515(InterPro)
Hepe06g0203 683 Coils Coil 468 488 - -
Hepe06g0203 683 Pfam PPR repeat 142 171 IPR002885 -
Hepe06g0203 683 Pfam PPR repeat family 279 328 IPR002885 -
Hepe06g0203 683 Pfam PPR repeat family 209 258 IPR002885 -
Hepe06g0203 683 SUPERFAMILY t-snare proteins 419 647 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Hepe06g0203 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Hepe06g0203 683 FunFam Syntaxin-81 like 586 680 - -
Hepe06g0203 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Hepe06g0203 683 Gene3D - 587 680 - -
Hepe06g0203 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Hepe06g0203 683 NCBIfam pentatricopeptide repeat 283 316 IPR002885 -
Hepe06g0203 683 NCBIfam pentatricopeptide repeat 142 174 IPR002885 -
Hepe06g0203 683 NCBIfam pentatricopeptide repeat 213 246 IPR002885 -
Hepe06g0203 683 NCBIfam pentatricopeptide repeat 248 281 IPR002885 -
Hepe06g0203 683 PANTHER SYNTAXIN-18 416 683 - GO:0005783(PANTHER)|GO:0006890(PANTHER)|GO:0031201(PANTHER)
Hepe06g0203 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Hepe06g0203 683 Gene3D Tetratricopeptide repeat domain 191 351 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3337 Hepe-Chr2:82957496 Hepe06g0203 Hepe-Chr6:7242585 6.31e-160 dispersed
Hepe03g0032 Hepe-Chr3:364476 Hepe06g0203 Hepe-Chr6:7242585 5.49e-10 dispersed
Hepe05g2077 Hepe-Chr5:71264225 Hepe06g0203 Hepe-Chr6:7242585 2.92e-10 dispersed
Hepe06g0201 Hepe-Chr6:7224108 Hepe06g0203 Hepe-Chr6:7242585 2.92e-149 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0203 K20291 - csv:101214544 560.836