Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe06g0241 | ATGATGAAGCTATCGCGCTGGTTGTCCAGGAACCAGCTATTTGAACAAATTGTGTGTAAGAAAGATGGTCGTGTTGGGCATCCTTTTGGGTCGCATCCTTTCTCATCTCGAGTTGGCATTCCGGATTCTAGACAGAATTTTACTCATACAGTCACTAAGAATGCAGGTAACCGAGTTTATGCTGCTTATAATGTATACAAGGGCAAAGCTGGACTCTCTATGATGCCTTGTCTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGCAATTGATCGACGTGGTTCAGTAATGCTGACATTCTTTCCTGCCATGGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCCCCAACAGAGGTTGGTACTATAATAAGTTTGGGTCCCAGAGACTCTTGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTTCTGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGGCCCATGCAGATGGCAATGGCTATTTCGTCTCTTTGAATGTTGTTGATAACACGCAAAACACTAAAGAATTCTTGAGCGTTCCCTTCACACTAGGCGAATTTTCTGTGATGAAGACAGCTTGCAATTTTGCTCTGCCTCACATTCTCGGTTGGGACCGGCTCACCAGACCTAGTCCTGACATGGGAAAGGTTCTTCAACCAAATAAGGTTGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGA | 726 | 44.08 | MMKLSRWLSRNQLFEQIVCKKDGRVGHPFGSHPFSSRVGIPDSRQNFTHTVTKNAGNRVYAAYNVYKGKAGLSMMPCLPTFTKLESGSLAIDRRGSVMLTFFPAMGERKYDWTKKQLFALSPTEVGTIISLGPRDSCEFFHDPGMLSSSAGQVRKSLSIKAHADGNGYFVSLNVVDNTQNTKEFLSVPFTLGEFSVMKTACNFALPHILGWDRLTRPSPDMGKVLQPNKVDREALSLEWER | 241 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8796840 | 8821665 | + | Hsped.06g02410.1 | Hepe06g0241 | 571616 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe06g0241 | 241 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 57 | 240 | IPR009044 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Hepe06g0241 | 241 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 35 | 241 | IPR013742 | GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro) | |
Hepe06g0241 | 241 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 51 | 221 | IPR009044 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Hepe06g0241 | 241 | Pfam | Whirly transcription factor | 65 | 199 | IPR013742 | GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe06g0241 | Hepe-Chr6:8796840 | Hepe08g1597 | Hepe-Chr8:23005597 | 2.61e-49 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55720 | PF08536 | Whirly | 1.40E-53 | CL0609 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe06g0241 | K26561 | - | csv:101219085 | 389.423 |