Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0241 ATGATGAAGCTATCGCGCTGGTTGTCCAGGAACCAGCTATTTGAACAAATTGTGTGTAAGAAAGATGGTCGTGTTGGGCATCCTTTTGGGTCGCATCCTTTCTCATCTCGAGTTGGCATTCCGGATTCTAGACAGAATTTTACTCATACAGTCACTAAGAATGCAGGTAACCGAGTTTATGCTGCTTATAATGTATACAAGGGCAAAGCTGGACTCTCTATGATGCCTTGTCTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGCAATTGATCGACGTGGTTCAGTAATGCTGACATTCTTTCCTGCCATGGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCCCCAACAGAGGTTGGTACTATAATAAGTTTGGGTCCCAGAGACTCTTGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTTCTGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGGCCCATGCAGATGGCAATGGCTATTTCGTCTCTTTGAATGTTGTTGATAACACGCAAAACACTAAAGAATTCTTGAGCGTTCCCTTCACACTAGGCGAATTTTCTGTGATGAAGACAGCTTGCAATTTTGCTCTGCCTCACATTCTCGGTTGGGACCGGCTCACCAGACCTAGTCCTGACATGGGAAAGGTTCTTCAACCAAATAAGGTTGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGA 726 44.08 MMKLSRWLSRNQLFEQIVCKKDGRVGHPFGSHPFSSRVGIPDSRQNFTHTVTKNAGNRVYAAYNVYKGKAGLSMMPCLPTFTKLESGSLAIDRRGSVMLTFFPAMGERKYDWTKKQLFALSPTEVGTIISLGPRDSCEFFHDPGMLSSSAGQVRKSLSIKAHADGNGYFVSLNVVDNTQNTKEFLSVPFTLGEFSVMKTACNFALPHILGWDRLTRPSPDMGKVLQPNKVDREALSLEWER 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8796840 8821665 + Hsped.06g02410.1 Hepe06g0241 571616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0241 241 SUPERFAMILY ssDNA-binding transcriptional regulator domain 57 240 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe06g0241 241 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 35 241 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Hepe06g0241 241 Gene3D Transcriptional Coactivator Pc4; Chain A 51 221 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe06g0241 241 Pfam Whirly transcription factor 65 199 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0241 Hepe-Chr6:8796840 Hepe08g1597 Hepe-Chr8:23005597 2.61e-49 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55720 PF08536 Whirly 1.40E-53 CL0609 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0241 K26561 - csv:101219085 389.423