Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0241 ATGATGAAGCTATCGCGCTGGTTGTCCAGGAACCAGCTATTTGAACAAATTGTGTGTAAGAAAGATGGTCGTGTTGGGCATCCTTTTGGGTCGCATCCTTTCTCATCTCGAGTTGGCATTCCGGATTCTAGACAGAATTTTACTCATACAGTCACTAAGAATGCAGGTAACCGAGTTTATGCTGCTTATAATGTATACAAGGGCAAAGCTGGACTCTCTATGATGCCTTGTCTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGCAATTGATCGACGTGGTTCAGTAATGCTGACATTCTTTCCTGCCATGGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCCCCAACAGAGGTTGGTACTATAATAAGTTTGGGTCCCAGAGACTCTTGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTTCTGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGGCCCATGCAGATGGCAATGGCTATTTCGTCTCTTTGAATGTTGTTGATAACACGCAAAACACTAAAGAATTCTTGAGCGTTCCCTTCACACTAGGCGAATTTTCTGTGATGAAGACAGCTTGCAATTTTGCTCTGCCTCACATTCTCGGTTGGGACCGGCTCACCAGACCTAGTCCTGACATGGGAAAGGTTCTTCAACCAAATAAGGTTGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGA 726 44.08 MMKLSRWLSRNQLFEQIVCKKDGRVGHPFGSHPFSSRVGIPDSRQNFTHTVTKNAGNRVYAAYNVYKGKAGLSMMPCLPTFTKLESGSLAIDRRGSVMLTFFPAMGERKYDWTKKQLFALSPTEVGTIISLGPRDSCEFFHDPGMLSSSAGQVRKSLSIKAHADGNGYFVSLNVVDNTQNTKEFLSVPFTLGEFSVMKTACNFALPHILGWDRLTRPSPDMGKVLQPNKVDREALSLEWER 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8796840 8821665 + Hsped.06g02410.1 Hepe06g0241 571616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0241 241 SUPERFAMILY ssDNA-binding transcriptional regulator domain 57 240 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe06g0241 241 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 35 241 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Hepe06g0241 241 Gene3D Transcriptional Coactivator Pc4; Chain A 51 221 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe06g0241 241 Pfam Whirly transcription factor 65 199 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0241 K26561 - - csv:101219085 389.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0241 Hepe-Chr6:8796840 Hepe08g1597 Hepe-Chr8:23005597 2.61e-49 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g1597 . 46 273 Whirly Transcription Factor Family AT1G14410 68.4 3.2e-90 328.6
Hepe06g0241 . 58 215 Whirly Transcription Factor Family AT1G71260 65.2 3.8e-58 221.9
Hepe08g1597 . 49 273 Whirly Transcription Factor Family AT2G02740 69.0 1.1e-88 323.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012554 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55720 PF08536 Whirly 1.40E-53 CL0609 Hepe TF