Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0242 ATGGCTTATGAGCATTTGGATCCATCTAAAGGATATTCAGTTGCTTCAGGACCAGTTTCAAGACCTGCTCCTGAACTGAAGCTGTATCAGTTTTTTATATTCTGTATTCCAGTTCTTTTCACTTTCATTCTTCTCTTCCTTTTCTATCTCCTTTATCTTCGTCGAAGAAGTGCTGATTGGAGTTCCATTCGAATGCGAACATCTTCTGCAGTCAACAACAATAACATCTCTACGTCTGAAGCTGGGTTGAAGAAGGAATTCAGGGAGATGCTTCCCATTATTGTGTACAATGAGACATTCTTTGTCAGTGACACGCTATGTTCAGTCTGTTTAGGAGAATACAAAACAGAAGATAAGCTTCAGAAGATACCACCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTATCCAACCACAACACTTGCCCTCTCTGCCGTCTCTCCGTCCTTTCTCCGTCGTCTCAACCACCACATATTCAGATTGACGTGGGACTCGAATCGTCGAACGAACAACAACGCGACACAGCAACTCCTCGAGACAGTAATCAAGCTTGTCAACATACAACACCTCCAGTGTAG 588 43.03 MAYEHLDPSKGYSVASGPVSRPAPELKLYQFFIFCIPVLFTFILLFLFYLLYLRRRSADWSSIRMRTSSAVNNNNISTSEAGLKKEFREMLPIIVYNETFFVSDTLCSVCLGEYKTEDKLQKIPPCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDVGLESSNEQQRDTATPRDSNQACQHTTPPV 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8862639 8865655 - Hsped.06g02420.1 Hepe06g0242 571617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0242 195 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Hepe06g0242 195 MobiDBLite consensus disorder prediction 170 195 - -
Hepe06g0242 195 SMART ring_2 107 148 IPR001841 -
Hepe06g0242 195 CDD RING-H2_EL5-like 107 149 - -
Hepe06g0242 195 SUPERFAMILY RING/U-box 91 160 - -
Hepe06g0242 195 PANTHER RING-H2 FINGER PROTEIN ATL16 24 175 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Hepe06g0242 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 154 IPR013083 -
Hepe06g0242 195 Pfam Ring finger domain 106 149 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0242 Hepe-Chr6:8862639 Hepe08g0717 Hepe-Chr8:6450972 3.67e-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0242 K19039 - csv:101219324 326.25