Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0322 ATGGCGAGCTCAATGGGGAGCTATGGCGCTGCGACATCGAGCTATCGCGGGGTTCGGAAGAGGAAATGGGGTAAATGGGTGTCGGAGATTCGAGAGCCGGGAAAAAAGACGAGAATATGGTTGGGGAGCTTCGAAACTCCGGAGATGGCAGCGGCGGCCTACGATGTCGCCGCTTACCATTTCCGCGGTTGCGATGCCCGCCTCAACTTTCCACATATTATCAACTCTCTCCCCTTCCCTCTTAGCTCCACACCTGATGACATCCGCCTCGCCGCCCATGAGGCGGCGCTGCGGCTGCGAACAATGCCAACCGTTGCGCCCGAAAGCGGTGAAACTTCCGCCTCGGGCTTGGCCCCGGTTACTGTCCGGCTGTCGCCGAGCCAAATTCAGGCGATTAATGAGTCGCCGTTGGACTCGCCAAAGATGTGGATGCAAATGTCGTCGGAGGGTTTGCTGATGGAGGAGTATTCAAATGGCAGTGTGTTTATTGATGACATGGACGATGAGATGTGGGAGAATATGCATAATGAGTCGCTGTGGGATCCTTAG 549 55.92 MASSMGSYGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGCDARLNFPHIINSLPFPLSSTPDDIRLAAHEAALRLRTMPTVAPESGETSASGLAPVTVRLSPSQIQAINESPLDSPKMWMQMSSEGLLMEEYSNGSVFIDDMDDEMWENMHNESLWDP 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11447789 11448337 - Hsped.06g03220.1 Hepe06g0322 571697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0322 182 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g0322 182 Pfam AP2 domain 14 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g0322 182 CDD AP2 13 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g0322 182 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g0322 182 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g0322 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 127 IPR051032 -
Hepe06g0322 182 Gene3D AP2/ERF domain 14 73 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g0322 182 SMART rav1_2 14 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g0322 182 SUPERFAMILY DNA-binding domain 13 72 IPR016177 GO:0003677(InterPro)
Hepe06g0322 182 FunFam Ethylene-responsive transcription factor 2 13 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0226 Hepe-Chr6:8026740 Hepe06g0322 Hepe-Chr6:11447789 3.66e-30 dispersed
Hepe06g0322 Hepe-Chr6:11447789 Hepe06g1118 Hepe-Chr6:59915307 2.57e-30 dispersed
Hepe06g0322 Hepe-Chr6:11447789 Hepe10g0364 Hepe-Chr10:3964166 3.46e-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55723 PF00847 AP2 2.20E-13 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0322 - - - 0.0