Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0439 ATGGATGAGAGTTCAGGATCAAACAATGGAAACCACAGTGTTTCTTTGAATATCAAAAATGATTCTTCAGCGGATTGTGTCCCTGTACTTTTCCTTCAGAAGTTGATTGCAGAGGTGATGGGGACATATTTCTTGATATTTGCAGGGGAAGCTTCAGTAGTGGTGAATTTGAACAAAGATGGAGTCATCACTTTCCCAGGGATTTCAATTGTTTGGGGTTTGGTTGTAATGGTGATGATCTATTCTGTTGGCCATATATCTGGTGCTCATTTTAACCCTTCTGTCACCATAGCCTTTGCCATTACCAGGAGATTTCCATGGAAAGAGGTGCCAGCATATTTGGTAGCTCAAGTTATTGGATCAACATTAGCAAGTGGGACACTTAGGCTAATATTTAATGGAATACAAGACCACTTTCCAGGAACTCTCCCAAGTGACTCATATCTGCAGACCTTTGTGATTGAATTCATAATCACATTTTACCTCATGTTTGTGGTATCTGGTGTTGCCACTGACAATAGAGCCATTGGTGAGCTTGCTGGACTCGCCGTCGGTGCTACTGTACTTCTCAATGTGATGATTGCAGGGCCAATTACAGGAGCATCCATGAATCCAGCCAGAAGTTTGGGACCTGCTATAGTATTTAAACAGTTCAAAGGGTTATGGATCTACATGACAGCACCTATTCTAGGAGCAACTGCAGGTGCGTTAGTGTATAATACCACCAGGCGGGTCTGTTCTTATCTAACCTTGTGCCTAGATATCTTTGGTCGTGGAGCTTGCATTAGCAGATCCATCCCTCCTCCTTCTAGGAAGGATTATAGGTCGACAACAGACCAGCGTTAA 846 42.91 MDESSGSNNGNHSVSLNIKNDSSADCVPVLFLQKLIAEVMGTYFLIFAGEASVVVNLNKDGVITFPGISIVWGLVVMVMIYSVGHISGAHFNPSVTIAFAITRRFPWKEVPAYLVAQVIGSTLASGTLRLIFNGIQDHFPGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMIAGPITGASMNPARSLGPAIVFKQFKGLWIYMTAPILGATAGALVYNTTRRVCSYLTLCLDIFGRGACISRSIPPPSRKDYRSTTDQR 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23712439 23714463 - Hsped.06g04390.1 Hepe06g0439 571814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0439 281 NCBIfam MIP family channel protein 37 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe06g0439 281 ProSitePatterns MIP family signature. 90 98 IPR022357 -
Hepe06g0439 281 CDD MIP 33 240 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe06g0439 281 SUPERFAMILY Aquaporin-like 29 243 IPR023271 -
Hepe06g0439 281 PANTHER AQUAPORIN NIP2-1 19 243 IPR034294 -
Hepe06g0439 281 Pfam Major intrinsic protein 30 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe06g0439 281 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe06g0439 281 PRINTS Major intrinsic protein family signature 109 128 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe06g0439 281 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe06g0439 281 PRINTS Major intrinsic protein family signature 154 172 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe06g0439 281 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe06g0439 281 PRINTS Major intrinsic protein family signature 72 96 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe06g0439 281 Gene3D Glycerol uptake facilitator protein. 7 246 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1226 Hepe-Chr3:66533860 Hepe06g0439 Hepe-Chr6:23712439 4.43e-87 dispersed
Hepe06g0439 Hepe-Chr6:23712439 HepeContig70g0010 Hepe-ChrContig70:1765084 2.50e-39 dispersed
Hepe06g0439 Hepe-Chr6:23712439 Hepe06g0442 Hepe-Chr6:23783290 1.05e-163 proximal
Hepe02g1303 Hepe-Chr2:16542570 Hepe06g0439 Hepe-Chr6:23712439 2.24e-73 transposed
Hepe06g1398 Hepe-Chr6:64206685 Hepe06g0439 Hepe-Chr6:23712439 1.31e-67 transposed
Hepe07g0894 Hepe-Chr7:11521466 Hepe06g0439 Hepe-Chr6:23712439 9.46e-59 transposed
Hepe02g2066 Hepe-Chr2:50699984 Hepe06g0439 Hepe-Chr6:23712439 5.44e-59 wgd
Hepe02g1979 Hepe-Chr2:37893988 Hepe06g0439 Hepe-Chr6:23712439 4.57e-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0439 K09874 - csv:101219297 388.267