Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0462 ATGAGGGTTATCGTAGAGCTGAGCCACAGTGGATTAATTGGGTTTTCCCAAAGAACCCAGAGGAACAATCTGGTCCCTGTGAGGCTTTCCAAAGATAGAATTCCAATCAGAATTCTCCTGAGCTACAACTCCAACTCCACTCCCAAGCAGATGCAATCCACAACTACTGGTGGTTCCGGCGGACTCGCTCGATTCCGCTCTGCTCCGGCCGCCTGGTTGGAAGCACTTTTGGAGGACGAAGAAGAGGACCCACTCAAGCCTAATAACCACTGCTTGACTCACCTTCTCACCGGCGACTCCCCGCCGGATCAACCCTTGTTCCAATCCAATCCCTCCCCTGCTACCTTCCTCCGCCAAAATAGCTCTCCGCCCGACTTTGGAATTGGGGATGGATTTTACTCTTCCTATGCTCCTCTCACTTCCTCTCCCACTCTGAAAAGGGAAGAAAGTGGAGTTTCCAGTTTGATAGACATGGAAATGGAGAAGCTATTGGAGGACTCTGTCCCCTGCAGAGTCCGGGCCAAGCGTGGTTGTGCTACGCATCCTCGGAGCATTGCTGAGAGGGTTCGGAGGACTAAAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAATATGGATAAGCAGACGAACACTGCAGATATGTTAGAAGAAGCAGTGGAGTATGTCAAATTCCTTCAAAAGCAGATTCAGGAACTCACGGAGCATCAGCGAAGGTGCAAATGCATGGTTAAGGAATAA 747 50.07 MRVIVELSHSGLIGFSQRTQRNNLVPVRLSKDRIPIRILLSYNSNSTPKQMQSTTTGGSGGLARFRSAPAAWLEALLEDEEEDPLKPNNHCLTHLLTGDSPPDQPLFQSNPSPATFLRQNSSPPDFGIGDGFYSSYAPLTSSPTLKREESGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTKISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQELTEHQRRCKCMVKE 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25633955 25637012 - Hsped.06g04620.1 Hepe06g0462 571837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0462 248 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 56 241 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Hepe06g0462 248 SMART finulus 184 234 IPR011598 GO:0046983(InterPro)
Hepe06g0462 248 Pfam Helix-loop-helix DNA-binding domain 184 229 IPR011598 GO:0046983(InterPro)
Hepe06g0462 248 Coils Coil 218 238 - -
Hepe06g0462 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 245 IPR036638 GO:0046983(InterPro)
Hepe06g0462 248 CDD bHLH_AtbHLH_like 183 235 IPR045239 -
Hepe06g0462 248 Gene3D - 179 248 IPR036638 GO:0046983(InterPro)
Hepe06g0462 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 228 IPR011598 GO:0046983(InterPro)
Hepe06g0462 248 FunFam Transcription factor bHLH130 family 179 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0462 Hepe-Chr6:25633955 Hepe08g2459 Hepe-Chr8:65616674 2.70e-13 dispersed
Hepe06g0462 Hepe-Chr6:25633955 Hepe09g1096 Hepe-Chr9:12261210 1.56e-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55727 PF00010 HLH 3.60E-10 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0462 - - - 0.0