Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0539 ATGGACCCCACTCACTCCGATCCATCTCATGGCCGCCCTCTCCAACCTTCCTCCTCCTCCGCCGCCGCTTCCGGCGCCAAGTACAAGCTAATGTCTCCGGCCAAGCTCCCGATCTCCAGGTCCCCTTGCATTACCATCCCTCCCGGCCTCAGTCCCACTTCCTTCCTCGACTCCCCCGTTCTGCTTACCAACTTGAAGGTAGAGCCTTCTCCGACTACTGGGTCCTTTACCAAGCTTCCAATGGCACATAACTCTTCTAGCTCAGCAATTTATTCAATGACCACCATGGCTTTCTCAAATACGAATGCCTCAGATGAAGGAAAATCCAACTACTTCGAGTTCAAACCATATGTTGGACCAAATATGGTTCCTGCAGATTTGAGGCATAGGAAAGGTGAACAATCTAGAGAAGTTCAAGTTCAAGGCCATCATCAACCATTTACTGCTCCACCTATGATCAAAAGTGAGATCAATGTCATTTCAAATGATTTGAGTCGATCAACCCAGATGGATACAGTTGCCTCAGGGGCGGCTAGTGTTCCTGAAGTTGATGGCGATGATTTCAACCATAGTTTGAACACAAATACCAGGGTTCAGCCCCCACAATCTGATCCAAAAGGCAGTGGCATTCCAGTAGTTTCTGATAGGTTATCCGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCGCGTAGCTATTATAAATGTACACACCCTAACTGTGAAGTGAAAAAGCTCTTTGAACGCTCTCATGATGGACAGATAACTGATATTATCTATAAGGGTACCCATGATCATCCTAAGCCTCAGCCAAGTCGGCGATATTCTGCCAGTGCTTCTGTGAATGCTCAAGAAGATGGGTCTGATAGGCCTTCACCTTTAACTGGCCAAGATGACAAGACGTGCGGCGTATATGCTCAAACATTGCATACCATTGCGCCAAATGGAACTTCAGAACAATCCCATGTTGCAAATGATAGCATTGCCGAAGGTGCAGGAACAACTCTACCAGGCAGGAGTCATGATGAGGTTGATGACGATGACATATTCTCGAAGCGGAGGAAAATGGAACTTGGTGGTTTCGACGTCTGCCCAATGGTCAAGCCAATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGTGAGGTCGATATACTGGATGACGGGTATCGCTGGCGCAAATATGGCCAGAAGGTAGTGAGAGGAAACCCCAACCCAAGGAGTTATTACAAGTGCACAAATGTTGGATGCCCTGTTAGAAAACATGTCGAAAGAGCATCCCATGACCCAAAAGCTGTTATAACTACATATGAGGGAAAACATAATCATGACGTTCCCACTGCAAAAACTAGTAGCCATGACGTTGCAGGGCCATCGACAATTGCACCATCGAGGTATAGACTCGAAGAGAGTGACACCATAAGCCTTGATCTTGGTGTTGGCATTGGCACGGGTGGTGAGAATAGATTGAACGAATACAGGCACACATTGCATTCTCAACTTGTTGAAAACCAAACACCAAATGGAAATTTCAACTTCGAAGTAGTTCAAGAGAACTCAGCCCCAACCTATTTCGGTGTTCTCAACAGAGGTATAAACCAGCATGGATCAAGAGAGAGTTTGAGCGAAAGCCGCACCATGGAGATTGCTCCGCTAAACCATTCATCCCACCCTTATCCGCCGAGCATTGGGAGAATACTAACAGGGCCCTAA 1737 46.75 MDPTHSDPSHGRPLQPSSSSAAASGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKVEPSPTTGSFTKLPMAHNSSSSAIYSMTTMAFSNTNASDEGKSNYFEFKPYVGPNMVPADLRHRKGEQSREVQVQGHHQPFTAPPMIKSEINVISNDLSRSTQMDTVASGAASVPEVDGDDFNHSLNTNTRVQPPQSDPKGSGIPVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKPQPSRRYSASASVNAQEDGSDRPSPLTGQDDKTCGVYAQTLHTIAPNGTSEQSHVANDSIAEGAGTTLPGRSHDEVDDDDIFSKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVAGPSTIAPSRYRLEESDTISLDLGVGIGTGGENRLNEYRHTLHSQLVENQTPNGNFNFEVVQENSAPTYFGVLNRGINQHGSRESLSESRTMEIAPLNHSSHPYPPSIGRILTGP 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30761365 30772646 - Hsped.06g05390.1 Hepe06g0539 571914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0539 578 ProSiteProfiles WRKY domain profile. 213 277 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0539 578 MobiDBLite consensus disorder prediction 1 26 - -
Hepe06g0539 578 SUPERFAMILY WRKY DNA-binding domain 386 454 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0539 578 Pfam WRKY DNA -binding domain 395 452 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0539 578 Pfam WRKY DNA -binding domain 219 275 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0539 578 SUPERFAMILY WRKY DNA-binding domain 215 277 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0539 578 Gene3D WRKY domain 381 447 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0539 578 SMART WRKY_cls 218 276 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0539 578 SMART WRKY_cls 394 453 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0539 578 Gene3D WRKY domain 212 278 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0539 578 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 91 463 IPR044810 GO:0003700(InterPro)
Hepe06g0539 578 MobiDBLite consensus disorder prediction 281 308 - -
Hepe06g0539 578 MobiDBLite consensus disorder prediction 268 308 - -
Hepe06g0539 578 FunFam WRKY transcription factor 33 381 447 - -
Hepe06g0539 578 MobiDBLite consensus disorder prediction 559 578 - -
Hepe06g0539 578 ProSiteProfiles WRKY domain profile. 389 454 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0539 578 FunFam WRKY transcription factor 209 278 - -
Hepe06g0539 578 MobiDBLite consensus disorder prediction 188 220 - -
Hepe06g0539 578 MobiDBLite consensus disorder prediction 188 203 - -
Hepe06g0539 578 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0539 Hepe-Chr6:30761365 Hepe06g1242 Hepe-Chr6:62187790 2.56e-95 dispersed
Hepe02g0291 Hepe-Chr2:2830726 Hepe06g0539 Hepe-Chr6:30761365 1.58e-78 transposed
Hepe06g0539 Hepe-Chr6:30761365 HepeContig66g0141 Hepe-ChrContig66:11735812 3.29e-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55731 PF03106 WRKY 3.30E-25 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0539 - - - 0.0