Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0540 ATGCAAGAAGCTTCAAGAAAGAAAGTTCCAAATCAATCTCATAGGTTCTATGAACAGCCACAGCAAGAACCTCCTGGGTCCTATTACTGGCCTCCTATCAACCATCAAGGCGGCTTGTATTCTGACAATGTATTCGAACAAAATCCTCTACCATCCGAGGCTTTCAAACAGTACTGCAACCTTGAGTCGTCCTCGGGAACTAGTAGTTACCCTCCTCAAAATTCTTCCTCTACTGCTAGCTTCACATCATATGGAAGCCCTTCCTCACACCAAGAGTGCCATTCATACCCGTTAGACTCGTATTATTCTCCCGACAATAACTGTGCCTCGCCTGTGAGTAGATCTTGCTTAACAGATGATGCTGCTGATGACTTAAGGCACAAGATCAGGGAATTGGAGACTGCAATGCTTGGACCTGATGCAGATAGCCTTGACGTCTATTCCATCACTAATCAAGTCAATCCTGTATTACCTGTGCAAGAACCAGGGTGGAAAGATGTGGCTGGGATAGTCTCTAGAAAGGATTTGAAAGAGATGCTTTGTGCTTGTGCACGAGCGATAGGAGAAAATGATATGTTGACTGGTGAATGGTTGGTGTCGGAGTTACGTGGAATGGTCTCGGTTTCTGGTGACCCGATCCAGCGTTTAGGAGCTTACTTGTTAGAGGCACTTGTTGCAAGGACAGCCTCTTCAGGTAGTTCTATCTACAAATCCCTAAAATGTAAAGAGCCTATAGGTTCTGAAATGCTCTCATACATGCACATTCTCTATGAAGTTTGCCCTTATTTCAAGTTTGGGTACCTATCAGCAAATGGGGCAATTGCTGAAGCCATAAAAGGTGAAAATAGAGTTCACATAATTGATTTTCAGATAGCACAGGGAAATCAGTGGATCACATTGATGCAAGCTTGTGCGAATCGACCTGGAGGGCCCCCAAAGGTTACTATTACAGGCATAGATGATTCCGCTTCAGCTTTTGCTCGAGGAGGGGGGCTCGAGATTGTAGGGAAAAGGTTGTCAATTTTGGCGGAGTCATTAATGGTACCCTTTGAATTCCATGGAATTGCAGGCTCTGTTTCTGAAATTCAACGTGAACATCTAAAAGTTCAACCAGGTGAGGCCATTGCTGTGAATTTTGCCTTGGTGCTGCACCATATGCCAGATGAAAGTGTTGGCGGTCAGAATCACCGGGATCGAATTTTGCGGCTGGTCAAGAGCTTGTCTCCAAAAGTTGTGACTGTTGTCGAGCACGAGTCAAACAACAATACATCTCCCTTCTTTCCCCGTTTCCTCCAGACATTGAAATATTATACTTCTATTTTCGAGTCCATAGACGTGACTCTTCCAAGAGAGCACAAGGAGCGGATCAATGTGGAGCAGCACTGTTTAGCTCGCGACATCGTTAATATAGTAGCATGTGAGGGAGCCGAAAGAGTCGAACGTCATGAACTTCTCGGAAAGTGGAGATCACGGTTCATCATGGCCGGGTTTAAGTCACACCCATTAAGCCCTTTTGTCAATGCTACCATTGAGGCACTGCTAAAGAACTACTGTGACAAGTACACGCTTGAAGAAAGGGATGGAGCTCTATATCTCGGCTGGTTCAATCAAAATTTGGTTACTTCTAGTGCTTGGATTTGA 1641 44.85 MQEASRKKVPNQSHRFYEQPQQEPPGSYYWPPINHQGGLYSDNVFEQNPLPSEAFKQYCNLESSSGTSSYPPQNSSSTASFTSYGSPSSHQECHSYPLDSYYSPDNNCASPVSRSCLTDDAADDLRHKIRELETAMLGPDADSLDVYSITNQVNPVLPVQEPGWKDVAGIVSRKDLKEMLCACARAIGENDMLTGEWLVSELRGMVSVSGDPIQRLGAYLLEALVARTASSGSSIYKSLKCKEPIGSEMLSYMHILYEVCPYFKFGYLSANGAIAEAIKGENRVHIIDFQIAQGNQWITLMQACANRPGGPPKVTITGIDDSASAFARGGGLEIVGKRLSILAESLMVPFEFHGIAGSVSEIQREHLKVQPGEAIAVNFALVLHHMPDESVGGQNHRDRILRLVKSLSPKVVTVVEHESNNNTSPFFPRFLQTLKYYTSIFESIDVTLPREHKERINVEQHCLARDIVNIVACEGAERVERHELLGKWRSRFIMAGFKSHPLSPFVNATIEALLKNYCDKYTLEERDGALYLGWFNQNLVTSSAWI 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30762455 30764095 + Hsped.06g05400.1 Hepe06g0540 571915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0540 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 140 545 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe06g0540 546 MobiDBLite consensus disorder prediction 1 34 - -
Hepe06g0540 546 ProSiteProfiles GRAS family profile. 167 546 IPR005202 -
Hepe06g0540 546 MobiDBLite consensus disorder prediction 62 84 - -
Hepe06g0540 546 Pfam GRAS domain family 176 545 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1320 Hepe-Chr1:78408881 Hepe06g0540 Hepe-Chr6:30762455 8.38e-163 dispersed
Hepe04g1711 Hepe-Chr4:72209398 Hepe06g0540 Hepe-Chr6:30762455 6.50e-179 dispersed
Hepe06g0540 Hepe-Chr6:30762455 Hepe08g0397 Hepe-Chr8:3565298 7.53e-222 dispersed
Hepe09g0722 Hepe-Chr9:6884803 Hepe06g0540 Hepe-Chr6:30762455 7.79e-61 transposed
Hepe03g1077 Hepe-Chr3:60769915 Hepe06g0540 Hepe-Chr6:30762455 3.12e-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55732 PF03514 GRAS 8.00E-128 CL0063 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0540 K27748 - csv:101220072 962.985