Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0588 ATGCCAAATTCCCCATTTCCATCCTCAATGCTCCCAAGAAATCTCATCGTTTTCGCCATTTTCCTCATTCTCTTCCCCCCACCGGAAACAGAGAGCATCGGCTTCGATTTCACTTCTTTCAACATCAGAAACCTCACTCTCCTCGGTGATTCCCACCTCCGCGACGGCGTTATCGGCCTCACCAAAGAGCTCGGCGTCCCTTCTTCAAGCGCCGGCGCCGTAATTTACAACCAACCCATCGGATTCTACGACGCCGATTCCAACACCACCGCCTCTTTCTCCACAACTTTCTCTTTCTCCATTTCCAACATTAACCCCTCTTCCTCCGGCGATGGCCTTTCCTTCTTCCTCTCCCCCGATAATCAGACCCTCGGCAGCCCCGGCGGATATTTGGGCCTCGTCAATTCCTCCCAATTGACCAAGAACAAGTTCGTCGCCGTCGAATTTGATACGCGGCTCGATTCTTACTTCGGTGATCCCGATGCACACCATGTTGGTTTGGACATTGAGAGCTTGATTTCGATCAAGACGGCTAACCCTGCTTCTCAAGGGGTCGATCTCAGGAGTGGGAAGTTGATTACGGCTTGGATTGAGTACAAGAATGAGGAGGGTAGGTTGAGGGTTTTCTTGAGTCATTCTGGTTTGAAGCCTACGAAGGCGCTTCTCGATGTCGGTGTCGATCTTTCCAGCTATCTTAGGGAGGTTATGTATGTCGGGTTTTCGGGTTCGACGGAAGGGAGTACTGAGCTTCATTTGATTCAGAGTTGGAGTTTTTTTACTTCTGGGTTTGTTCCTGTTAGGCCTAGATTTAATCCTCATAATGTTTCTGATAGCTCTGTCATTGTTTCTCCTAATATTTCTTTATCTGATTCTGGGAATGTGCATCGTAGTCGGCTTGGGTTGGGTCTCAGCATCGCCGGACCGGCCTTCTTTTGTGCGGTGATTGCTGTGTTTGGTTTCTTTTCGCTTAGGAAATGGAGGAAGATTATGTCTCAGAAGAGCTTCAAGGCTGAGCTTTTGACAGGGCCTAGAGAGTTTAGTTACAGAGAATTAAAGACGGCTACAAAAGGGTTTCACTCGAGCAGGATCATTGGCAATGGAGCTTTCGGGACTGTCTATAAAGCTTTTTGCATCTCGCCGGGAACCATTTCGGCGGTTAAAAGATCGAAGCATTCCCACGAAGGGAAGACAGAGTTCCTGGCCGAGTTGTCCATCATAGCACGGTTGAGGCACAAGAATTTGGCTCAGCTCCAAGGTTGGTGTGTCGAGAAAGGTGAACTGCTTCTCGTTTACGACTTTATGCCGAACGGGAGCCTTGATAGGCTGCTTTACCAGGAATCTGGAGAAGCTAGCTTGTTAAACTGGTCTCACAGATACAACATTGCTGTCGGTTTGGCCTCTGTGCTGACATATCTACATCAGGAATGTGAGCAGCAGGTGATCCACAGAGATATAAAGACTGGTAATGTACTGCTGGATGCGAACTTCAATGCGAGATTGGGCGATTTTGGATTGGCAAAGCTCATGGATCATGACAAGAGCCCGGATTCGACTCTAACTGCAGGAACAATGGGATACCTTGCACCTGAGTACCTTCAATATGGGAAAGCGACTGAGAAAACCGATGTCTTCAGCTACGGCGTGGTTATCCTTGAAGTGGCCTGTGGGAGGAGGCCGATTGAAAGAGAAGCAGGTACTCAAAAGATGGTCAATCTGGTAGATTGGGTTTGGGGATTGCATTCTCAAGGCAAGATCATCGAAGCAGCCGATAAAAGGTTGAATGGGGAATTCAAAGAAGAAGAAATGAGGAAGCTGTTACTTGTGGGATTGAGCTGCGCAAACCCGGATAGCTCAACGAGGCCTTCGATGAGGAAGGTCCTACAGATTCTCAACAATGAGGCAGAGCCGGTATTCGTACCGAAAATGAAGCCTAGTCTAACATTTTCTTGTGGCTTTTCACTGACTGTGGATGACATTATAGTAGAGGAAGGAGGAGGAGAGTGGGAATCTTCAAAGACCATTGTCCAAATAGACTGA 2037 48.06 MPNSPFPSSMLPRNLIVFAIFLILFPPPETESIGFDFTSFNIRNLTLLGDSHLRDGVIGLTKELGVPSSSAGAVIYNQPIGFYDADSNTTASFSTTFSFSISNINPSSSGDGLSFFLSPDNQTLGSPGGYLGLVNSSQLTKNKFVAVEFDTRLDSYFGDPDAHHVGLDIESLISIKTANPASQGVDLRSGKLITAWIEYKNEEGRLRVFLSHSGLKPTKALLDVGVDLSSYLREVMYVGFSGSTEGSTELHLIQSWSFFTSGFVPVRPRFNPHNVSDSSVIVSPNISLSDSGNVHRSRLGLGLSIAGPAFFCAVIAVFGFFSLRKWRKIMSQKSFKAELLTGPREFSYRELKTATKGFHSSRIIGNGAFGTVYKAFCISPGTISAVKRSKHSHEGKTEFLAELSIIARLRHKNLAQLQGWCVEKGELLLVYDFMPNGSLDRLLYQESGEASLLNWSHRYNIAVGLASVLTYLHQECEQQVIHRDIKTGNVLLDANFNARLGDFGLAKLMDHDKSPDSTLTAGTMGYLAPEYLQYGKATEKTDVFSYGVVILEVACGRRPIEREAGTQKMVNLVDWVWGLHSQGKIIEAADKRLNGEFKEEEMRKLLLVGLSCANPDSSTRPSMRKVLQILNNEAEPVFVPKMKPSLTFSCGFSLTVDDIIVEEGGGEWESSKTIVQID 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43230643 43232679 - Hsped.06g05880.1 Hepe06g0588 571963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0588 678 Pfam Legume lectin domain 34 262 IPR001220 GO:0030246(InterPro)
Hepe06g0588 678 CDD lectin_legume_LecRK_Arcelin_ConA 35 262 IPR001220 GO:0030246(InterPro)
Hepe06g0588 678 FunFam L-type lectin-domain containing receptor kinase VIII.1 31 271 - -
Hepe06g0588 678 PANTHER - 45 640 IPR050528 GO:0002229(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Hepe06g0588 678 Gene3D - 30 265 - -
Hepe06g0588 678 SMART serkin_6 358 638 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g0588 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe06g0588 678 FunFam L-type lectin-domain containing receptor kinase VIII.1 322 433 - -
Hepe06g0588 678 FunFam L-type lectin-domain containing receptor kinase VIII.1 434 648 - -
Hepe06g0588 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 265 IPR013320 -
Hepe06g0588 678 ProSitePatterns Legume lectins beta-chain signature. 145 151 IPR019825 -
Hepe06g0588 678 CDD STKc_IRAK 364 632 - -
Hepe06g0588 678 ProSiteProfiles Protein kinase domain profile. 358 638 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g0588 678 SUPERFAMILY Protein kinase-like (PK-like) 341 650 IPR011009 -
Hepe06g0588 678 Gene3D Transferase(Phosphotransferase) domain 1 434 649 - -
Hepe06g0588 678 Gene3D Phosphorylase Kinase; domain 1 321 433 - -
Hepe06g0588 678 Pfam Protein kinase domain 358 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g0588 678 ProSitePatterns Protein kinases ATP-binding region signature. 364 387 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2778 Hepe-Chr2:76376830 Hepe06g0588 Hepe-Chr6:43230643 1.42e-146 dispersed
Hepe06g0588 Hepe-Chr6:43230643 Hepe07g0579 Hepe-Chr7:6253157 8.87e-138 dispersed
Hepe02g0339 Hepe-Chr2:3217946 Hepe06g0588 Hepe-Chr6:43230643 1.69e-128 transposed
Hepe05g0247 Hepe-Chr5:2915505 Hepe06g0588 Hepe-Chr6:43230643 4.26e-206 transposed
Hepe08g1094 Hepe-Chr8:10802324 Hepe06g0588 Hepe-Chr6:43230643 7.47e-115 transposed
Hepe10g1145 Hepe-Chr10:45365074 Hepe06g0588 Hepe-Chr6:43230643 1.15e-09 wgd
Hepe02g2209 Hepe-Chr2:62428442 Hepe06g0588 Hepe-Chr6:43230643 1.19e-59 wgd
Hepe04g0281 Hepe-Chr4:47743227 Hepe06g0588 Hepe-Chr6:43230643 7.30e-16 wgd
Hepe04g0323 Hepe-Chr4:49638851 Hepe06g0588 Hepe-Chr6:43230643 7.30e-16 wgd
Hepe06g0141 Hepe-Chr6:5131041 Hepe06g0588 Hepe-Chr6:43230643 4.29e-64 wgd
Hepe06g0588 Hepe-Chr6:43230643 Hepe07g0962 Hepe-Chr7:12912952 8.91e-66 wgd
Hepe06g0588 Hepe-Chr6:43230643 HepeContig65g0075 Hepe-ChrContig65:6350091 1.30e-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72862 PF00069 Pkinase 1.10E-49 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0588 - - - 0.0