Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0593 ATGGAATGTGGAGGAACACCTGCAGGAGGAGGAGATGGTTTTCATAGCTATAGAAGGCAACAACCTAAACCAACCTCTGCGTTGAACATGTTGTTAACCACAAACAAGCCATCCTCCGCCAACAACACTCCCGACAGCAACCACCACCACTTAAATGGTCTAAACGGCATTGCTAACTCCCCCACGGCCTCCAATGTCGCCACCAATAATGATTTGAGCCAACAATGCGTCGTGCGGGAGCAAGACCAATACATGCCGATTGCCAATGTTATACGTATCATGCGGCGAATCTTACCCTCCCATGCAAAGATATCCGATGACGCCAAGGAGACCATCCAAGAATGTGTGTCGGAGTACATCAGCTTCATCACCGGCGAGGCCAACGAGCGATGCCAGCGGGAGCAGCGCAAGACGGTGACGGCGGAGGATGTCCTCTGGGCCATGGGGAAGCTAGGCTTCGATGACTACATTGAACCACTAACTGTGTTCCTCAATCGCTACCGTGAGTCGGAGAGTGATCGAATTCGCACAGAGCCGATCTTGAGGCGCAATGTGGATTATGGGCCGCAAGTGGGAATGCTACCACCATACGGGCAGTTTCAAATAGGGCACGTCCCAACAGGGATGTTCGATGCCATGGGCGGTTACTATGGAGGAGGTGGGAACGGCGGGTCGAGCTCGGGGAATGGTAGCCAACTTTGA 702 53.13 MECGGTPAGGGDGFHSYRRQQPKPTSALNMLLTTNKPSSANNTPDSNHHHLNGLNGIANSPTASNVATNNDLSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMLPPYGQFQIGHVPTGMFDAMGGYYGGGGNGGSSSGNGSQL 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43822035 43829092 - Hsped.06g05930.1 Hepe06g0593 571968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0593 233 ProSitePatterns NF-YB/HAP3 subunit signature. 115 131 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0593 233 MobiDBLite consensus disorder prediction 1 20 - -
Hepe06g0593 233 FunFam Nuclear transcription factor Y subunit B-6 73 185 - -
Hepe06g0593 233 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 65 174 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Hepe06g0593 233 SUPERFAMILY Histone-fold 81 174 IPR009072 GO:0046982(InterPro)
Hepe06g0593 233 Gene3D Histone, subunit A 73 184 IPR009072 GO:0046982(InterPro)
Hepe06g0593 233 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 85 148 IPR003958 -
Hepe06g0593 233 MobiDBLite consensus disorder prediction 34 66 - -
Hepe06g0593 233 PRINTS CCAAT-binding transcription factor subunit A signature 112 130 - -
Hepe06g0593 233 PRINTS CCAAT-binding transcription factor subunit A signature 150 168 - -
Hepe06g0593 233 PRINTS CCAAT-binding transcription factor subunit A signature 131 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0593 Hepe-Chr6:43822035 Hepe08g0381 Hepe-Chr8:3406020 7.30e-42 dispersed
Hepe06g0593 Hepe-Chr6:43822035 Hepe06g0594 Hepe-Chr6:43833629 5.46e-116 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55734 PF00808 CBFD_NFYB_HMF 2.90E-25 CL0012 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0593 K08065 - csv:116402762 316.235