Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0617 ATGGCGGACTCCGACGACGACTCCGGCGGCGGCGGTGGGTACCGGAAATCTCCGTCTCCACGGGAGCAGGACAGACTCCTCCCGATCGCGAACGTGGGCCGGATCATGAAGAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAGACCGTCCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCACAACGAGAAGCGGAAGACGATCAACGGCGACGATTTACTCTGGGCCATGGCGACTTTAGGGTTCGAAAACTATGTCGATCCTCTCAAGCTTTATCTCCAGCGCTTTCGTGAAATTGAAGGAGAGAGGAACACGCTCGTCTCACGTGACACCTCCGCCACCGCCTCCGTCGCTACCGGAGCTACGAATAGTGCGTATTTTGACGGCGGCGGCGGTGAATTCGGGGGTGGGATGGGGATGATGACGACGATGCCTCCGAATGTTTATGGATCTAATGGGCAGCGTTGGGATGGGCCTGGGCCTGGGTTTAATAATACGGGTCGGCCCAAGTAG 552 58.15 MADSDDDSGGGGGYRKSPSPREQDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFENYVDPLKLYLQRFREIEGERNTLVSRDTSATASVATGATNSAYFDGGGGEFGGGMGMMTTMPPNVYGSNGQRWDGPGPGFNNTGRPK 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45893488 45894564 - Hsped.06g06170.1 Hepe06g0617 571992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0617 183 FunFam Nuclear transcription factor Y subunit B-3 15 138 - -
Hepe06g0617 183 MobiDBLite consensus disorder prediction 1 26 - -
Hepe06g0617 183 SUPERFAMILY Histone-fold 23 127 IPR009072 GO:0046982(InterPro)
Hepe06g0617 183 MobiDBLite consensus disorder prediction 164 183 - -
Hepe06g0617 183 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0617 183 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 126 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Hepe06g0617 183 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Hepe06g0617 183 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Hepe06g0617 183 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Hepe06g0617 183 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Hepe06g0617 183 Gene3D Histone, subunit A 13 137 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0617 K08065 - - csv:101204640 279.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1918 Hepe-Chr3:76251358 Hepe06g0617 Hepe-Chr6:45893488 3.01e-50 dispersed
Hepe05g0232 Hepe-Chr5:2736226 Hepe06g0617 Hepe-Chr6:45893488 4.24e-50 dispersed
Hepe06g0617 Hepe-Chr6:45893488 Hepe08g0381 Hepe-Chr8:3406020 3.54e-56 dispersed
Hepe06g0617 Hepe-Chr6:45893488 Hepe01g0881 Hepe-Chr1:72932981 2.62e-49 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0593 . 13 174 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.1 4.6e-48 188.3
Hepe06g0594 . 69 175 CCAAT-HAP3 Transcription Factor Family AT5G47670 82.2 6.0e-48 188.0
Hepe08g0381 . 6 119 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.5 1.3e-37 153.7
Hepe06g0593 . 76 215 CCAAT-HAP3 Transcription Factor Family AT1G21970 67.8 1.9e-49 193.0
Hepe06g0594 . 77 216 CCAAT-HAP3 Transcription Factor Family AT1G21970 66.4 7.2e-49 191.0
Hepe08g0381 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.8 5.1e-54 207.6
Hepe06g0617 . 19 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.7 3.3e-45 178.3
Hepe01g0881 . 105 223 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.7 6.2e-44 174.1
Hepe05g0232 . 75 181 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.5 2.4e-43 172.2
Hepe03g1918 . 49 144 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.0 8.7e-38 153.7
Hepe01g0881 . 92 208 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.1 5.5e-50 194.1
Hepe05g0232 . 51 165 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 8.8e-48 186.8
Hepe08g0381 . 20 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.9 5.5e-42 167.5
Hepe06g0617 . 19 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.7 8.0e-41 163.7
Hepe03g1918 . 45 155 CCAAT-HAP3 Transcription Factor Family AT2G38880 65.8 4.4e-39 157.9
Hepe03g1918 . 47 144 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 8.1e-44 173.7
Hepe06g0617 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.6e-39 159.5
Hepe08g0381 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.0 4.6e-39 157.9
Hepe05g0232 . 51 223 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.1 3.9e-60 228.0
Hepe01g0881 . 98 225 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.6 2.7e-53 205.3
Hepe08g0381 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.9 1.9e-43 172.6
Hepe06g0617 . 16 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.0 1.5e-40 162.9
Hepe03g1918 . 48 150 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.9 3.5e-37 151.8
Hepe08g0381 . 22 117 CCAAT-HAP3 Transcription Factor Family AT2G13570 85.4 6.3e-44 174.5
Hepe06g0617 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.3e-41 166.0
Hepe05g0232 . 54 170 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.1 2.9e-41 165.6
Hepe01g0881 . 118 212 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.7 2.8e-39 159.1
Hepe03g1918 . 49 149 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 1.4e-38 156.8
Hepe08g0381 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 6.2e-51 197.6
Hepe06g0617 . 15 119 CCAAT-HAP3 Transcription Factor Family AT5G47640 85.7 7.1e-47 184.1
Hepe01g0881 . 118 228 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 4.7e-43 171.4
Hepe05g0232 . 61 174 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 1.5e-41 166.4
Hepe03g1918 . 49 145 CCAAT-HAP3 Transcription Factor Family AT5G47640 77.3 5.4e-39 157.9
Hepe05g0232 . 62 218 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.0 4.1e-57 218.0
Hepe01g0881 . 103 225 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.8 1.6e-53 206.1
Hepe08g0381 . 6 116 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.1 3.4e-43 171.8
Hepe06g0617 . 16 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.0 3.2e-41 165.2
Hepe03g1918 . 48 150 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.9 7.3e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55736 PF00808 CBFD_NFYB_HMF 2.00E-27 CL0012 Hepe TF