Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0617 ATGGCGGACTCCGACGACGACTCCGGCGGCGGCGGTGGGTACCGGAAATCTCCGTCTCCACGGGAGCAGGACAGACTCCTCCCGATCGCGAACGTGGGCCGGATCATGAAGAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAGACCGTCCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCACAACGAGAAGCGGAAGACGATCAACGGCGACGATTTACTCTGGGCCATGGCGACTTTAGGGTTCGAAAACTATGTCGATCCTCTCAAGCTTTATCTCCAGCGCTTTCGTGAAATTGAAGGAGAGAGGAACACGCTCGTCTCACGTGACACCTCCGCCACCGCCTCCGTCGCTACCGGAGCTACGAATAGTGCGTATTTTGACGGCGGCGGCGGTGAATTCGGGGGTGGGATGGGGATGATGACGACGATGCCTCCGAATGTTTATGGATCTAATGGGCAGCGTTGGGATGGGCCTGGGCCTGGGTTTAATAATACGGGTCGGCCCAAGTAG 552 58.15 MADSDDDSGGGGGYRKSPSPREQDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFENYVDPLKLYLQRFREIEGERNTLVSRDTSATASVATGATNSAYFDGGGGEFGGGMGMMTTMPPNVYGSNGQRWDGPGPGFNNTGRPK 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45893488 45894564 - Hsped.06g06170.1 Hepe06g0617 571992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0617 183 FunFam Nuclear transcription factor Y subunit B-3 15 138 - -
Hepe06g0617 183 MobiDBLite consensus disorder prediction 1 26 - -
Hepe06g0617 183 SUPERFAMILY Histone-fold 23 127 IPR009072 GO:0046982(InterPro)
Hepe06g0617 183 MobiDBLite consensus disorder prediction 164 183 - -
Hepe06g0617 183 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0617 183 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 126 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Hepe06g0617 183 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Hepe06g0617 183 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Hepe06g0617 183 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Hepe06g0617 183 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Hepe06g0617 183 Gene3D Histone, subunit A 13 137 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1918 Hepe-Chr3:76251358 Hepe06g0617 Hepe-Chr6:45893488 3.01e-50 dispersed
Hepe05g0232 Hepe-Chr5:2736226 Hepe06g0617 Hepe-Chr6:45893488 4.24e-50 dispersed
Hepe06g0617 Hepe-Chr6:45893488 Hepe08g0381 Hepe-Chr8:3406020 3.54e-56 dispersed
Hepe06g0617 Hepe-Chr6:45893488 Hepe01g0881 Hepe-Chr1:72932981 2.62e-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55736 PF00808 CBFD_NFYB_HMF 2.00E-27 CL0012 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0617 K08065 - csv:101204640 279.256