Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe06g0617 | ATGGCGGACTCCGACGACGACTCCGGCGGCGGCGGTGGGTACCGGAAATCTCCGTCTCCACGGGAGCAGGACAGACTCCTCCCGATCGCGAACGTGGGCCGGATCATGAAGAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAGACCGTCCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCACAACGAGAAGCGGAAGACGATCAACGGCGACGATTTACTCTGGGCCATGGCGACTTTAGGGTTCGAAAACTATGTCGATCCTCTCAAGCTTTATCTCCAGCGCTTTCGTGAAATTGAAGGAGAGAGGAACACGCTCGTCTCACGTGACACCTCCGCCACCGCCTCCGTCGCTACCGGAGCTACGAATAGTGCGTATTTTGACGGCGGCGGCGGTGAATTCGGGGGTGGGATGGGGATGATGACGACGATGCCTCCGAATGTTTATGGATCTAATGGGCAGCGTTGGGATGGGCCTGGGCCTGGGTTTAATAATACGGGTCGGCCCAAGTAG | 552 | 58.15 | MADSDDDSGGGGGYRKSPSPREQDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFENYVDPLKLYLQRFREIEGERNTLVSRDTSATASVATGATNSAYFDGGGGEFGGGMGMMTTMPPNVYGSNGQRWDGPGPGFNNTGRPK | 183 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 45893488 | 45894564 | - | Hsped.06g06170.1 | Hepe06g0617 | 571992 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe06g0617 | 183 | FunFam | Nuclear transcription factor Y subunit B-3 | 15 | 138 | - | - | |
Hepe06g0617 | 183 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Hepe06g0617 | 183 | SUPERFAMILY | Histone-fold | 23 | 127 | IPR009072 | GO:0046982(InterPro) | |
Hepe06g0617 | 183 | MobiDBLite | consensus disorder prediction | 164 | 183 | - | - | |
Hepe06g0617 | 183 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 57 | 73 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe06g0617 | 183 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 17 | 126 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Hepe06g0617 | 183 | PRINTS | CCAAT-binding transcription factor subunit A signature | 73 | 91 | - | - | |
Hepe06g0617 | 183 | PRINTS | CCAAT-binding transcription factor subunit A signature | 92 | 110 | - | - | |
Hepe06g0617 | 183 | PRINTS | CCAAT-binding transcription factor subunit A signature | 54 | 72 | - | - | |
Hepe06g0617 | 183 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 26 | 90 | IPR003958 | - | |
Hepe06g0617 | 183 | Gene3D | Histone, subunit A | 13 | 137 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g1918 | Hepe-Chr3:76251358 | Hepe06g0617 | Hepe-Chr6:45893488 | 3.01e-50 | dispersed | |
Hepe05g0232 | Hepe-Chr5:2736226 | Hepe06g0617 | Hepe-Chr6:45893488 | 4.24e-50 | dispersed | |
Hepe06g0617 | Hepe-Chr6:45893488 | Hepe08g0381 | Hepe-Chr8:3406020 | 3.54e-56 | dispersed | |
Hepe06g0617 | Hepe-Chr6:45893488 | Hepe01g0881 | Hepe-Chr1:72932981 | 2.62e-49 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55736 | PF00808 | CBFD_NFYB_HMF | 2.00E-27 | CL0012 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe06g0617 | K08065 | - | csv:101204640 | 279.256 |