Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0728 ATGGCAGCCGGAGATGACGACTGGGATCTCTCCGCCGTCGTACGGAGCTGCAATTATTCAGCTGCTTCGGCCGCCAACAGAACAGCCTCCGCCGCCTCCGCCGCCGCCGCCGCGGAAACCGCCTTCTCTTGTCTCGCTTCTTTTACGTTTGACGACGATCCAAACGACGTCGCATTCTCGTTTTCCGACATCCTTCAACCCAAACAGCCCGACGCCTTCCATGAATTACATCAAGCCTTCATGTCCTTTCTCCCCAACCCCGTCCCCGTCCCCACCGCCGTCGCCGTCGCCGTCGCACCCGCCGCTGCGCCGGAAATACCCAAGCCCACCCGGGGCCGCCATTCACGACAGGGAGTAAAACCCATTCGCCCCCAGCCGGCTCTTGGTGCGGCGGCGGCGCCACAGCACCATCACCACCACCACCGGCCGCCACCGTACCCGCCGGAGTTCCCAAATTCGCGACTGACGTATTCTCACATACCCAAATCGAGAAAAAGGCAAAAGAGAATCGTTTGCCATGTTACTGCAGAAAATCTCTCAACGGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGATCTCCATATCCAAGAAACTATTACCGTTGCAGCAGTTCAAAAGGTTGTGGAGCAAGAAAGCAAGTTGAACGGAGCTATGCTGATCCGGAGACTTTCATCATCACATACACCGGAGATCACACTCATCCACGCCCAACTCACCGGAATTCCCTCGCCGGAAGTTCCCGGAACAGGTCTTCGTCTTCGATCCCCCCCATGAACCCGGTCACGGGAGATCCCGATCCGTCGTTGGCCGTTGCTCCCGTCATGGGGTCTTGCTCCTCCCCCGCCTCCTCTCCGGTCACACCGATGAACGAGGATGGCGAAAGAGAGAGAGAGATGTTCGAGCATATGACGATCGATAGTGATGATGACGACGATGATGATAATGATATTCTGATCCCGAACTTGGGAGTGAGAGAGGAAATCTTTGTCGGTCTTGAGGCGGAGCTCGGTTGTAGCTCCCGAAGACGCCCATCGTAA 1050 56.67 MAAGDDDWDLSAVVRSCNYSAASAANRTASAASAAAAAETAFSCLASFTFDDDPNDVAFSFSDILQPKQPDAFHELHQAFMSFLPNPVPVPTAVAVAVAPAAAPEIPKPTRGRHSRQGVKPIRPQPALGAAAAPQHHHHHHRPPPYPPEFPNSRLTYSHIPKSRKRQKRIVCHVTAENLSTDMWAWRKYGQKPIKGSPYPRNYYRCSSSKGCGARKQVERSYADPETFIITYTGDHTHPRPTHRNSLAGSSRNRSSSSIPPMNPVTGDPDPSLAVAPVMGSCSSPASSPVTPMNEDGEREREMFEHMTIDSDDDDDDDNDILIPNLGVREEIFVGLEAELGCSSRRRPS 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 53314997 53316292 + Hsped.06g07280.1 Hepe06g0728 572103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0728 349 Gene3D WRKY domain 163 234 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0728 349 ProSiteProfiles WRKY domain profile. 175 241 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0728 349 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 317 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Hepe06g0728 349 FunFam WRKY transcription factor 22 163 234 - -
Hepe06g0728 349 MobiDBLite consensus disorder prediction 232 272 - -
Hepe06g0728 349 MobiDBLite consensus disorder prediction 127 168 - -
Hepe06g0728 349 Pfam WRKY DNA -binding domain 182 239 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0728 349 SUPERFAMILY WRKY DNA-binding domain 174 241 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0728 349 SMART WRKY_cls 180 240 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g0728 349 MobiDBLite consensus disorder prediction 243 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0728 Hepe-Chr6:53314997 Hepe07g0767 Hepe-Chr7:9275384 2.64e-40 dispersed
Hepe04g2070 Hepe-Chr4:75521484 Hepe06g0728 Hepe-Chr6:53314997 2.62e-34 transposed
Hepe07g1659 Hepe-Chr7:57982642 Hepe06g0728 Hepe-Chr6:53314997 2.92e-34 transposed
Hepe05g1977 Hepe-Chr5:70248354 Hepe06g0728 Hepe-Chr6:53314997 3.60e-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55743 PF03106 WRKY 3.00E-25 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0728 - - - 0.0