Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0775 ATGATGAGGGTGTCTTCATCTTTTGGAACATGGAAGCACAATCGTTGGAAAGTTTGCTTGAAGCTATTCCCAACTCTATGTAAAAGTTTACATACTGAAAACTCCAATATTATTTCTACCAATATTTGTATAAGTTGTCATGTAAGAAACGGTCATCTTGATCTTGCTCAAACTCTGTTCGACGAAATGCCGGTCAGAAGTGTTGTCTCATGGAATATCATGATTTCTGGATACTCCAAATTAGGACAGTGTAGTGAAGCTCATAATCTGGCTTCAAGGATGCATCACAGCAATGTAAAATTAAATGAGAAGACCTTTTCTAGTTTGTTGAGTATTTATGCACATGCAGGGTGTGCATATGAGGGAAAACAACTTCATTGTTTGGTTTTGAAATCTGGGTTGCAGATTTTTGAGCTTGTGGGAAGTGCACTGTTGTATTTCTACGCGAACATCAATGACATTAATGGAGCTAAGCAGGTTTTTGATGAGTTGCATGATGAGAATGATTTGTTATGGAGTTTGATGCTTGTGGGGTATGTCAAATGCAATTTGATGGATGATGCTTTTGATCTGTTTACAAAAATTCCGAGACGGGATGTGGTGGCGTGGACTACTTTGATATCAGGGTATGCAAGAAGTGAGCACAACTGCAAAAGGGCATTGGAATTATTCTGCTCCATGTGGATGAATGGTGAGGTTGAGCCTAACGAGTTCACTTTTGATTGTGTTGTGAGAGCTTGTGGGAGATTGAGAGATTTGGGTCAGGGGAAGGTTGTTCATGGGATTTTGACTAAATATGGATTCCACTTCGATCATTCAATTTGTGGTGCACTGATTTTATTTTATTGTCAGTGTGAAGCTATTGACAATGCCAAGGGAGTTTATGATAGTATGGCAAGACCATGTTTAAATGCTTCAAATTCTCTTCTGGAGGGGCTGATATTAGCAGGAAGAATTAATGATGCTGAGGAAATTTTTGACAAGTTAAGAGAAAAAAATCCAGTTTCATACAATTTGATGCTTAAAGGGTATGCAATTAGTGGTAGAATTGAAGAATCAAAGAGATTATTTGAAAGAATGACGCATAAAACTGTAATATCAGCGAACACTATGATATCTCTGTATTCCAGGAATGGTGAAATTGATGAAGCTTTCAAATTGTTTGAGTCAATGAAGGGTGAAGGAAATCCCGTGACATGGAATTCAATGATATCAGGCTATATTCAAAATCATCAGCATGAAGAAGCTTTGAAACTCTATCAAACCATGTGCAGAACATCAGTTGAGCGCTCTAGATCAACATTCTCTGCTCTGCTTCAAGCATGCACATGCCTAGGATCTATTCAATTGGGTCGATCACTCCATGGACATGCAATCAAGACAGCTTTTGACTCGAATGTTTATGTTGGAACATCACTCATAGATATGTACTCAAAGTGTGGGAGCATCTATGATGCTAAAACCTCGTTTACCAGTGTTTATTCCCCTAATGTAGCAACTTTTACCGCTCTAATTAATGGATACGTGCAACATGGCCTTGGGATTGAAGCATTCTTAGTCTTTGAAGATATGTTAAAGCACAAAGTTATGCCAAATGCAGCTACTCTTTTGGGGATTCTTTCTGCATGTAGTCGTGTTGGTATGGTAGATGAAGGAATGACAATTTTCCACTCTATGGAAAAATGTTATGGTGTGATTCCAACTTTAGAACACTATGCATGTGTGGTGGATCTTCTTGGTCGGTCGGGACGTTTGTATGAAGCTGAAGAATTTGTCAGAAACATGCCAATCGAAGCTGATGGGGTTATTTGGGGAGCTCTGCTAAATGCTTGTTGGTTTTGGATGGACTTGGAATTGGGTGAGAGTGTGGCTAAGAAGATGCTTAGTTTGGAGCCCAAAGCAATATCTGCTTATGTTATTCTGTCTAATATATATGCTATATTAGGGAAGTGGGTAGAGAAGATCGATGTGAGGAGGCGATTGAGGAGCTTAAAAGTGAAAAAGAATCGTGGTTGTAGTTGGATCGATATAAATAATAGAACTCATGTTTTCTCTGTAGAAGATAGGTCCCATCCTAATTGTTATGAAATTTATGCAACTTTGGAGCATCTATTAGCAAATGTAAACTCTATAGCTCAATTTGACCATGTTCCCAAATCAGTTTCGGAGGTTTCTTTTTCGAATGCAATACACTCCCTTTGA 2202 38.51 MMRVSSSFGTWKHNRWKVCLKLFPTLCKSLHTENSNIISTNICISCHVRNGHLDLAQTLFDEMPVRSVVSWNIMISGYSKLGQCSEAHNLASRMHHSNVKLNEKTFSSLLSIYAHAGCAYEGKQLHCLVLKSGLQIFELVGSALLYFYANINDINGAKQVFDELHDENDLLWSLMLVGYVKCNLMDDAFDLFTKIPRRDVVAWTTLISGYARSEHNCKRALELFCSMWMNGEVEPNEFTFDCVVRACGRLRDLGQGKVVHGILTKYGFHFDHSICGALILFYCQCEAIDNAKGVYDSMARPCLNASNSLLEGLILAGRINDAEEIFDKLREKNPVSYNLMLKGYAISGRIEESKRLFERMTHKTVISANTMISLYSRNGEIDEAFKLFESMKGEGNPVTWNSMISGYIQNHQHEEALKLYQTMCRTSVERSRSTFSALLQACTCLGSIQLGRSLHGHAIKTAFDSNVYVGTSLIDMYSKCGSIYDAKTSFTSVYSPNVATFTALINGYVQHGLGIEAFLVFEDMLKHKVMPNAATLLGILSACSRVGMVDEGMTIFHSMEKCYGVIPTLEHYACVVDLLGRSGRLYEAEEFVRNMPIEADGVIWGALLNACWFWMDLELGESVAKKMLSLEPKAISAYVILSNIYAILGKWVEKIDVRRRLRSLKVKKNRGCSWIDINNRTHVFSVEDRSHPNCYEIYATLEHLLANVNSIAQFDHVPKSVSEVSFSNAIHSL 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 54355743 54357944 - Hsped.06g07750.1 Hepe06g0775 572150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0775 733 Pfam E motif 616 676 IPR046848 -
Hepe06g0775 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Hepe06g0775 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Hepe06g0775 733 Gene3D Tetratricopeptide repeat domain 257 364 IPR011990 GO:0005515(InterPro)
Hepe06g0775 733 Gene3D Tetratricopeptide repeat domain 124 255 IPR011990 GO:0005515(InterPro)
Hepe06g0775 733 Gene3D Tetratricopeptide repeat domain 10 123 IPR011990 GO:0005515(InterPro)
Hepe06g0775 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Hepe06g0775 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 101 IPR002885 -
Hepe06g0775 733 Gene3D Tetratricopeptide repeat domain 515 684 IPR011990 GO:0005515(InterPro)
Hepe06g0775 733 Gene3D Tetratricopeptide repeat domain 365 463 IPR011990 GO:0005515(InterPro)
Hepe06g0775 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 234 IPR002885 -
Hepe06g0775 733 Pfam PPR repeat family 396 442 IPR002885 -
Hepe06g0775 733 Pfam PPR repeat family 496 544 IPR002885 -
Hepe06g0775 733 Pfam PPR repeat family 67 114 IPR002885 -
Hepe06g0775 733 Pfam PPR repeat family 198 248 IPR002885 -
Hepe06g0775 733 NCBIfam pentatricopeptide repeat 69 103 IPR002885 -
Hepe06g0775 733 NCBIfam pentatricopeptide repeat 368 395 IPR002885 -
Hepe06g0775 733 NCBIfam pentatricopeptide repeat 539 568 IPR002885 -
Hepe06g0775 733 NCBIfam pentatricopeptide repeat 398 429 IPR002885 -
Hepe06g0775 733 NCBIfam pentatricopeptide repeat 500 533 IPR002885 -
Hepe06g0775 733 NCBIfam pentatricopeptide repeat 335 361 IPR002885 -
Hepe06g0775 733 PANTHER OS07G0578800 PROTEIN-RELATED 366 694 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Hepe06g0775 733 Pfam PPR repeat 307 333 IPR002885 -
Hepe06g0775 733 Pfam PPR repeat 40 66 IPR002885 -
Hepe06g0775 733 Pfam PPR repeat 335 362 IPR002885 -
Hepe06g0775 733 Pfam PPR repeat 367 395 IPR002885 -
Hepe06g0775 733 SUPERFAMILY HCP-like 297 430 - -
Hepe06g0775 733 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 468 694 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0775 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0775 Hepe-Chr6:54355743 Hepe04g1145 Hepe-Chr4:66571962 9.57e-90 dispersed
Hepe01g0350 Hepe-Chr1:52364598 Hepe06g0775 Hepe-Chr6:54355743 1.70e-68 wgd
Hepe02g1839 Hepe-Chr2:28143605 Hepe06g0775 Hepe-Chr6:54355743 1.91e-67 wgd
Hepe05g1086 Hepe-Chr5:52973631 Hepe06g0775 Hepe-Chr6:54355743 4.79e-86 wgd
Hepe06g0775 Hepe-Chr6:54355743 HepeContig66g0198 Hepe-ChrContig66:16634950 7.90e-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g871 Blo06g01077 . . . . . . . . . Cma02g01103 . . . . Cpe05g00613 . . . . . . . . Cla01g00059 . . . . . . . . . . . Csa05g00067 Chy09g01423 . . . . Bda15g00777 . Bpe12g00374 . . . Cmo02g01130 . . . . . . . Bhi12g00617 . . . Hepe06g0775 . Lcy12g0117 . . . . . . . Lsi09g00038 . . Cme09g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004896 1 4 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 1 1 1 1 1 1 1 3 1 36