Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0789 ATGGCGATTATCTCTGAGTTCGAAGAGAAGGTAGAAATCCCCAAACCAAAGAAGCCTTCCTCCGCCGCCTCCTCCTCTTCATCGACGACTAAGCCCTCTCAGTTCAATGCCAACTTCGACCCTTCAAACCCTCTAGGGTTTTTGGAGACGGTGTTCGATTTTCTTGCCAAGGAGAGCGATTTTCTCTCCAGGGATAGAATCGAGAAGGAAATCGAGACGGTAGTTCGCAGAGCTGTGGAGAAGAGGAAGAAGCATGAGGAGTCGGTTGAGCTTAAAGGAAAGGCCGAGAAGAGGATCAAGGAGGAGGTTAAGAGTGTGAAGCGGGAAGCTGCGCCGGTGACTGTGAAGGAGGAGCCGAGGACTGTGGTGTCATCGCCGGAAGAGAAAGTGGATGTGAAGTCGGAGGAGAAGAAAGAGGAGAATGGACCGAGAGTTCCCAACAAAGGTAATGGCCTTGATATGGACAACTACTCTTGGACACAGACCCTGCAAGAAGTCAACGTTAATGTACCAGTACCCAAAGGAACTAAGTCCAGGTTTGTTGTATGTGAGATCAAGAAGAGCCATCTCAAAATTGGACTAAAGGGTCAACCACCAGTTATAGATGCAGAGCTTTGTCATATTGTCAAGCCAGATGACTGTTATTGGAGCATAGAGGATCAGAGCATCGTCTCTATTCTTTTGACCAAGCATAACCAAATGGAGTGGTGGAAGTATTTAGTGAAAGGTGATCCTGAGATTGATACTCAGAAGGTTGAACCTGAGAACAGCAAACTAGCTGATTTGGATCCAGAAACACGGCAGACTGTTGAGAAGATGATGTTTGATCAAAGGCAGAAGTCTATGGGGCTCCCAACCAGTGATGAGATGCAGAAGCAAGATATTATGAAGAAGTTCATGTCTGAGCATCCGGAGATGGACTTTTCAAGGGCAAAGATAGCATAA 945 46.77 MAIISEFEEKVEIPKPKKPSSAASSSSSTTKPSQFNANFDPSNPLGFLETVFDFLAKESDFLSRDRIEKEIETVVRRAVEKRKKHEESVELKGKAEKRIKEEVKSVKREAAPVTVKEEPRTVVSSPEEKVDVKSEEKKEENGPRVPNKGNGLDMDNYSWTQTLQEVNVNVPVPKGTKSRFVVCEIKKSHLKIGLKGQPPVIDAELCHIVKPDDCYWSIEDQSIVSILLTKHNQMEWWKYLVKGDPEIDTQKVEPENSKLADLDPETRQTVEKMMFDQRQKSMGLPTSDEMQKQDIMKKFMSEHPEMDFSRAKIA 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 54562306 54566495 - Hsped.06g07890.1 Hepe06g0789 572164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0789 314 MobiDBLite consensus disorder prediction 117 144 - -
Hepe06g0789 314 FunFam Nuclear migration protein nudC 148 275 - -
Hepe06g0789 314 PANTHER NUCLEAR MOVEMENT PROTEIN NUDC 34 313 IPR037898 GO:0005737(PANTHER)|GO:0006457(PANTHER)|GO:0051082(PANTHER)
Hepe06g0789 314 MobiDBLite consensus disorder prediction 19 40 - -
Hepe06g0789 314 Coils Coil 64 84 - -
Hepe06g0789 314 ProSiteProfiles CS domain profile. 152 241 IPR007052 -
Hepe06g0789 314 SUPERFAMILY HSP20-like chaperones 142 256 IPR008978 -
Hepe06g0789 314 Gene3D - 148 275 IPR008978 -
Hepe06g0789 314 MobiDBLite consensus disorder prediction 117 152 - -
Hepe06g0789 314 CDD p23_NUDC_like 157 241 - -
Hepe06g0789 314 Pfam CS domain 156 230 IPR007052 -
Hepe06g0789 314 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0789 K25866 - - csv:101222013 504.212
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g914 . . . . . . . . . . . . . . . Cpe05g00602 . . . . . . . . . . . . . . . . . . . . . Chy09g01436 . . . . . . Bpe12g00353 . . . . . . . . . . Cpe13g00313 Bhi12g00632 . . Lac11g0151 Hepe06g0789 . Lcy12g0130 . . . . . . . Lsi09g00024 . . Cme09g01982
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006262 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38