Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0826 ATGATTTTTGAGGTGGTTGAACTGAGATCCAATTACCCTTTTGCAGGAATTCTAGACCCGCTATCTCCAATGAGGACAATGAGGCAAATGCTGGACACAATGGACAGGTTGTTCGACGACGCAGTGTCGAGGCCAGGATGGAGGGCGAGCCGAGCCCCTTGGGACATCGAAGAGCACGAAAACGAAATCAGGATGCGTTTCGACATGCCTGGACTCTCCAAGGAACATGTCAAGCTCTCTGTTGAAGACAACTTTTTGATTATAGAAGGCAGCCATAAGCATGAGATTGAGAATGCTAACAGGCACAGCTCTAGCTACCACACACGCCTCCAACTTCCTGATGGGGTTGACAAGGACAACATCAAGGCCGAGCTTAAGAATGGTGTTCTTTACATTACACTTCCCAGGATCAAACTTCAACGCAAGATCATGGATATACAAATCCAGTGA 450 47.33 MIFEVVELRSNYPFAGILDPLSPMRTMRQMLDTMDRLFDDAVSRPGWRASRAPWDIEEHENEIRMRFDMPGLSKEHVKLSVEDNFLIIEGSHKHEIENANRHSSSYHTRLQLPDGVDKDNIKAELKNGVLYITLPRIKLQRKIMDIQIQ 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 55066615 55067952 + Hsped.06g08260.1 Hepe06g0826 572201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0826 149 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 45 149 IPR002068 -
Hepe06g0826 149 SUPERFAMILY HSP20-like chaperones 23 141 IPR008978 -
Hepe06g0826 149 CDD ACD_sHsps-like 55 136 - -
Hepe06g0826 149 Gene3D - 15 149 IPR008978 -
Hepe06g0826 149 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 12 149 IPR044587 GO:0009408(InterPro)
Hepe06g0826 149 Pfam Hsp20/alpha crystallin family 55 149 IPR002068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0826 K13993 - - csv:101210285 209.149
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0826 Hepe-Chr6:55066615 Hepe10g1551 Hepe-Chr10:52250098 5.32e-30 dispersed
Hepe06g0826 Hepe-Chr6:55066615 Hepe01g0746 Hepe-Chr1:70582546 4.32e-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g976 . . . . . . . . . . . Cma15g00997 . Car15g00933 . . . . . . . . . . Cla01g00012 Cam01g0012 Cec01g0011 Cco01g0013 Clacu01g0013 Cmu01g0013 Cre09g2492 . . . . . Csa05g00004 Chy09g01476 . . . . . . . . . . . Cmo15g01062 . . . . . Cpe13g00336 Bhi12g00695 . . . Hepe06g0826 . . . . . . . . . . . . Cme09g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014143 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 23