Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0835 ATGGGCGAGGCTGTTGTTGTCAGCTCTGAGGATATGGATGTTGATTATGTTGTCAGGTCTGATTACGACGATATGGCGGATGCAGAGAGTATGGCTACTCACAAACCTAACAGAGATGGAAATTCAATTGGAATTAAGTGGGAGCGGTTTTTGCCTAAGATGATGCTCAGAGTTTTGCTTGTTGAAGCCGACGATTCCACTAGACAGATTATCACTGCCCTTCTCCGCAAGTGCGGCTACCGAGTTGCTGCTGTTCCTGATGGCTTGAAAGCATGGGAGATTCTCAAAGAAAGACCCCGTAATGTAGATCTTATATTGACGGAAGTTGAATTGCCATCAATCTCTGGATTTCCTCTGCTAACTCTGATTATGGAGCATGAGATTTGCAAAAATATTCCTGTTATAATGATGTCATCCCAGGATTCTATCAGCACTGTTTATAAATGTATGATGAAAGGTGCAGCAGACTATCTTCTCAAGCCCCTAAGGAGAAATGAGCTGACGAATCTGTGGCAACATGTTTGGAGAAGACAAGCATCATCCAATTTGAGAGCTGACACTCAAGAAAAGGTTGAAGTCACTTCAGAAAATGAGTCTGCAAGCAACCACTCAACTGGTCATGTTGCTGGAGTTCAGAGGAATAACAAAAACATTGAGAAAGGGAGTGATACTCAGAGCTCTTGTACGAAGGCAGATTTCGAGGCTGGAAGTAAGATGCAGGAAAATTCACAGCCTAGGCAGGGAAAAGCCTCTGCGATTGACTTCAAGCTACAGAAAGATGAATGTCACATCAATTTGAGTCAGAGATTGGTTATGCATGAAAATGAAGCTGGAGGATTGGCAATGAGTTGCTATGTCAATGCTGATTTACCAATTACACTAAGCATGGGTATTGAGCCAATCAATGATGGGAGGAGTCCTAATATTGCCAGTGAAGCAGGTGATATTAAGGATTTGCTTGCCAACTCATCCAGAGATGCAACTGCCTTGAATCATGCCTGTATCAATTATTCCGATAACTACCAAAGAAATTCTCCGTCCACCGATGCTGCCACAAACAATTTCGGCTCTGCTCTTCATTTGGATCTTTCCCTGAGAAGATGTCAACCTAATGATTTTGAGGACCGTGCTGCAGAAGTACGGGCTACCCTCAAACATTCTAGTGTTTCAGCTTTTACAAGATACACTTTCAGGCCATTGCAAACACTTCAAGCAAAATCAAGCAGTATCTGTGATGAGCAAAAGGAATTTGGAAGCAATTCCGAGCATATTGGAAGTGTGGCTGCTACTTCTACCTCTGACACCATTAATCCTACGCTAAGTCTGCAAAAGAGTAATACTTCTATGCCTCTGATAACCAGTCAATCTGCTCACTCGGAAGTTGCAAAATCAAGTACTGCAGAGGCGGTCATCCCTCTTCAAGTTTCAGCGAAAGATTTGATGTCTAATAATCAATACTCGGGCTATGGCTCTTTACTTTCTCCCAACTTCTGCGCCCAACGGGGTACCCCATCGTCTCCATACCCAACTTTAGTCACTCATCCAGAACCCATCTTTGAAAAACAGACGGTTTATCCCTTAAACCTTGAGAATCATAGTTTGGAGCAATTTCTGAACCAGCATCACAACGCAAGCAATCCAGCAAGCCGAAAGCTAGAAAACTCTTGGCAAAAGTTGGAGTGTGCAGAAAATCAAGGCCATACATCGCCTACCACTGATCACAGTGCAAACAGTAGTCCATGTGGTGGTAATACAACTCATGTTCGAAGCGTGGGATATCCTAGCACCTGCGGAAGCAACAGCAATGTCGATCCGGTCGGCATTGCATGGGTTACATCCGAGACCAGAAATGAAGAAGCTATGTTTTCTCAAGGAGGAGATTCTCACCGGTCCAGCCAAAGAGAAGCTGCTCTAACAAAGTTCCGACTAAAGCGAAAAGATAGATGCTACGAGAAAAAGGTGCGTTATGAGAGCAGGAAAAAGCTGGCCGAGCAGCGTCCTAGAGTGAAGGGACAGTTCGTCCGTAGAGTATACACGGATGATCTATTGCCTGCAGAAATCAACGCCAATACATCCAACTGTTAG 2085 44.03 MGEAVVVSSEDMDVDYVVRSDYDDMADAESMATHKPNRDGNSIGIKWERFLPKMMLRVLLVEADDSTRQIITALLRKCGYRVAAVPDGLKAWEILKERPRNVDLILTEVELPSISGFPLLTLIMEHEICKNIPVIMMSSQDSISTVYKCMMKGAADYLLKPLRRNELTNLWQHVWRRQASSNLRADTQEKVEVTSENESASNHSTGHVAGVQRNNKNIEKGSDTQSSCTKADFEAGSKMQENSQPRQGKASAIDFKLQKDECHINLSQRLVMHENEAGGLAMSCYVNADLPITLSMGIEPINDGRSPNIASEAGDIKDLLANSSRDATALNHACINYSDNYQRNSPSTDAATNNFGSALHLDLSLRRCQPNDFEDRAAEVRATLKHSSVSAFTRYTFRPLQTLQAKSSSICDEQKEFGSNSEHIGSVAATSTSDTINPTLSLQKSNTSMPLITSQSAHSEVAKSSTAEAVIPLQVSAKDLMSNNQYSGYGSLLSPNFCAQRGTPSSPYPTLVTHPEPIFEKQTVYPLNLENHSLEQFLNQHHNASNPASRKLENSWQKLECAENQGHTSPTTDHSANSSPCGGNTTHVRSVGYPSTCGSNSNVDPVGIAWVTSETRNEEAMFSQGGDSHRSSQREAALTKFRLKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRRVYTDDLLPAEINANTSNC 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 55125390 55129213 + Hsped.06g08350.1 Hepe06g0835 572210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0835 694 MobiDBLite consensus disorder prediction 185 229 - -
Hepe06g0835 694 Pfam CCT motif 634 676 IPR010402 GO:0005515(InterPro)
Hepe06g0835 694 CDD psREC_PRR 58 161 - -
Hepe06g0835 694 ProSiteProfiles CCT domain profile. 634 676 IPR010402 GO:0005515(InterPro)
Hepe06g0835 694 SMART REC_2 56 171 IPR001789 GO:0000160(InterPro)
Hepe06g0835 694 SUPERFAMILY CheY-like 55 181 IPR011006 -
Hepe06g0835 694 ProSiteProfiles Response regulatory domain profile. 57 175 IPR001789 GO:0000160(InterPro)
Hepe06g0835 694 Pfam Response regulator receiver domain 58 169 IPR001789 GO:0000160(InterPro)
Hepe06g0835 694 PANTHER TWO-COMPONENT RESPONSE REGULATOR 44 235 IPR045279 GO:0009736(InterPro)
Hepe06g0835 694 Gene3D - 54 280 - -
Hepe06g0835 694 MobiDBLite consensus disorder prediction 563 583 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0986 Hepe-Chr5:44811528 Hepe06g0835 Hepe-Chr6:55125390 2.19e-12 dispersed
Hepe06g0835 Hepe-Chr6:55125390 Hepe09g0102 Hepe-Chr9:826206 1.18e-29 dispersed
Hepe06g0835 Hepe-Chr6:55125390 Hepe04g0907 Hepe-Chr4:63332278 4.76e-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55750 PF00072 Response_reg 6.40E-22 CL0304 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0835 K12130 - csv:101209788 1096.26