Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0844 ATGGCCAAATTAGCCACAAATCCCCTCCGATTTTGCATCTTGATTGCGGCGGCGGTGTTGTTGATTCAGTTTCCGACGCCGGTGGTTCCGGCGGCGGATCTTGTCCAAACAGAGTGTTTCTTGAAGGTATCCTCCTCGGAATTTTCCGACTCGATCCTCTCCACCATCGATATTCTGCGGGAGGTTATGGATATTTTCTCTCCGTTTAGTAAATTACTCGGCGGTGGTGATTCTCGGCTTTCCACCGCCATTTCCGACTGTCTGGATTTGCTTGATTCTTCTGCCGATCAGTTGACTTGGTCTCTCTCCGCCACTCAAAATCCCAAAGCTAAAAACAACAGCACCGGAGATCTGAGTTCCGACCTAAAGACATGGCTGAGCGCCGCCGTGGTTAATCCAGAAACATGCATGGATGGATTTGAGGGCACCAATAGCATTGTCAAAGGTCTAGTATCCGCAGGCATCAACCAGCTAACTTCACAGGTCTATGACCTTCTTTCCATGGTGAAATCAATCCCGACGAATAATCAGCAGTCGACTCGAAAATTGAAGAGCGAGTTTCCTTCGTGGGTAAAATCTGATGACCGGAATCTGCTGCAAGTAAATGACTTGGTCGCCGATGCGACTGTCGCCGCCGATGGGACGGGGGATTTCACCAATGTCATGGATGCGGTGCTAGCCGCTCCCGACAATAGCATGCGACGCTATGTCATATACATAAAGAAGGGTGTCTATTTGGAGAACGTGGAGATCAAGAAGAAGAAATGGAATCTCATGTTGATTGGAGATGGAATAGATGCTACCGTCATATCGGGTAATCGTAGTTTCATCGACGGTTGGACCACGTTCCGCTCAGCGACTTTCGCGGTTAGTGGAAGAGGATTCATAGCACGAGACATAACATTCGAGAACACTGCAGGACCAGAGAAACATCAAGCAGTGGCACTTAGATCCGACTCGGATTTGTCGGTATTTTTTAGATGTCGTATTAGAGGCTACCAAGACACGTTGTACACACACACCATGCGCCAATTCTACCGCGAGTGTCAAATCAGCGGCACTGTCGATTTCCTATTCGGCGACGCCACCGTCGTTTTCCAAAACTGCACCATCCTGGCTAAAAAGGGTCTTCCCAACCAGAAAAACACCATCACAGCTCAGGGTCGGAAGGACCCAAATCAACCCACCGGCTTCTCCATTCAATTTTGCAACATCTCGGCGGATTCCGACCTTCAACCGTCGGTTAACGCCACGGCGACGTACCTTGGTAGACCGTGGAAGGAATATTCAAGAACCATTATCATGCAGTCGTACATGAGCGACGCCATTACGCCACGAGGTTGGCTTGAATGGAACGGTGATTTTGCATTGAATACTTTGTTCTACGCCGAGTTCATGAATTACGGGCCGGGGGCGACGTTGGCTAAGCGTGTCGATTGGCCGGGCTACCGTCGTCTGAATCAAACGAGTCAAGCTTCTAACTTCACTGTGTCTGAGTTCATTAAAGGAAACTTGTGGTTGCCGTCCACAGGTGTCAAATTCAATGCAGGATTGGGAGCTAATTGA 1566 49.17 MAKLATNPLRFCILIAAAVLLIQFPTPVVPAADLVQTECFLKVSSSEFSDSILSTIDILREVMDIFSPFSKLLGGGDSRLSTAISDCLDLLDSSADQLTWSLSATQNPKAKNNSTGDLSSDLKTWLSAAVVNPETCMDGFEGTNSIVKGLVSAGINQLTSQVYDLLSMVKSIPTNNQQSTRKLKSEFPSWVKSDDRNLLQVNDLVADATVAADGTGDFTNVMDAVLAAPDNSMRRYVIYIKKGVYLENVEIKKKKWNLMLIGDGIDATVISGNRSFIDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVFFRCRIRGYQDTLYTHTMRQFYRECQISGTVDFLFGDATVVFQNCTILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFCNISADSDLQPSVNATATYLGRPWKEYSRTIIMQSYMSDAITPRGWLEWNGDFALNTLFYAEFMNYGPGATLAKRVDWPGYRRLNQTSQASNFTVSEFIKGNLWLPSTGVKFNAGLGAN 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 55241602 55247387 + Hsped.06g08440.1 Hepe06g0844 572219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0844 521 Pfam Pectinesterase 207 504 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe06g0844 521 PANTHER PECTINESTERASE 75 509 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe06g0844 521 SMART PMEI_2 30 172 IPR006501 GO:0004857(InterPro)
Hepe06g0844 521 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 171 IPR035513 -
Hepe06g0844 521 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 177 IPR035513 -
Hepe06g0844 521 SUPERFAMILY Pectin lyase-like 207 517 IPR011050 -
Hepe06g0844 521 Gene3D - 204 520 IPR012334 -
Hepe06g0844 521 FunFam Pectinesterase 201 518 - -
Hepe06g0844 521 Pfam Plant invertase/pectin methylesterase inhibitor 67 168 IPR006501 GO:0004857(InterPro)
Hepe06g0844 521 CDD PMEI-like_4 20 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0844 Hepe-Chr6:55241602 Hepe09g1678 Hepe-Chr9:50373634 5.60e-153 dispersed
Hepe06g0844 Hepe-Chr6:55241602 Hepe03g1383 Hepe-Chr3:70466893 8.68e-143 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0844 K01051 - csv:101207185 859.751