Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0848 ATGTACGTAGAAACCCCACAGAAGATCAAAGCAGCAATTTCTGTTTCTACCGCTCGTTCTTGCTTTCCCAGTTGTAGAATTATTCTCCCTTTGGAACCGGAGATGTGTGATGCGAAGGAGAAACTGAATTTTGCACAAGATGTTCCAGTTGCTGTAAGTGAAGGCAACCAAGTTGATTCAAAAGATGAGCTCCATGATTCTCTCCCTGTGCCAGCTGAAAATAAGATTGATTCACCCGAGACTCATGTACAGGAAGTTGTACCTCCTGAGGATGATAATTTAGATAAACCTACGATTCTTCAGCAATCAAATCAAGAGTCTGTGACTTCACTTCCCTTGGAACATGACAAAGAGTTGGATAAACCTGATGCAAAACCTGCTTCTGATGAGTTGCCCCCAATGGAGTTGGATCTAGATGCTGCTACTCCCAACATTCACCTGGAAACCGTTCAATCCTCGATGGATGCCAAATCTGAGGCCCTTGACATGGACATGCCTGAAACTAAAACTGGTCTTGATGATGCTTCAACAGAAAGTCATGATGAACCTGTAACTCCCCATCCAGTGTCACCTTGTATTAAAGCTGAAACAGAGATTTCCATAGAATTGAAGGTCAATGAAGAAAGTGTTACTACACCTCATAATGGGCATTCAAACATGAATCACTCGTTTGTTTTGGATGAAAATCATATTGCTGAAGGTGGTGAATCAGGAACAGAAGAAGATCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCCAAGTTTTACGGAGAGGGTCTGAATTGCCTCAAGCTATGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAGCCCCCAAAGACGTGTACGACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTTCTTGATTATGAGAGGCATAAAATCCATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACGCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAGGGTTGGCACTCACAGCGTCTTCTGGGAAATGGTGAAGTTAGTGACCCGATTATCAAGGATAAGAACTCACTTTCAATACAGAAAAGGGAAAAACAACTTAAAAGCATTGGTATTCTTAAACGTAAGAAACCATCTTACATGGAGCATTCCATGAAATCAGCGCGTACCAAATCATCAAAACCACAGTTGGACGTAGCAGTAGTGGATATTGGACAACCAGCTGATTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTGGTTCCCGGACTACTTCGCGAGGAGGTGCGTGTTCAGTCTGATCCGGCAGGACGCTTGGTTATTAGTGGTGAACCCGAACATCCGGATAATCCTTGGGGTGTCACACCCTTCAAAAAGGTAGTCAGCCTTCCATCAAGGATTGATCCACACCAGACTTCCGCCGTTGTCACCTTGCATGGACAGTTGTTTGTTCGCGTTCCGTTTGAACAGTTGGAATGA 1605 44.24 MYVETPQKIKAAISVSTARSCFPSCRIILPLEPEMCDAKEKLNFAQDVPVAVSEGNQVDSKDELHDSLPVPAENKIDSPETHVQEVVPPEDDNLDKPTILQQSNQESVTSLPLEHDKELDKPDAKPASDELPPMELDLDAATPNIHLETVQSSMDAKSEALDMDMPETKTGLDDASTESHDEPVTPHPVSPCIKAETEISIELKVNEESVTTPHNGHSNMNHSFVLDENHIAEGGESGTEEDQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIHGGELSVPIASNAEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSIQKREKQLKSIGILKRKKPSYMEHSMKSARTKSSKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 55404567 55411268 + Hsped.06g08480.1 Hepe06g0848 572223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0848 534 Gene3D - 240 337 IPR036431 GO:0003677(InterPro)
Hepe06g0848 534 MobiDBLite consensus disorder prediction 55 135 - -
Hepe06g0848 534 Pfam ARID/BRIGHT DNA binding domain 243 327 IPR001606 GO:0003677(InterPro)
Hepe06g0848 534 MobiDBLite consensus disorder prediction 166 181 - -
Hepe06g0848 534 Gene3D - 416 534 IPR008978 -
Hepe06g0848 534 CDD ARID 242 327 - -
Hepe06g0848 534 SUPERFAMILY HSP20-like chaperones 445 530 IPR008978 -
Hepe06g0848 534 MobiDBLite consensus disorder prediction 166 190 - -
Hepe06g0848 534 FunFam AT-rich interactive domain-containing protein 3 426 534 - -
Hepe06g0848 534 SMART ARID_2 237 327 - -
Hepe06g0848 534 MobiDBLite consensus disorder prediction 78 92 - -
Hepe06g0848 534 SUPERFAMILY ARID-like 235 339 IPR036431 GO:0003677(InterPro)
Hepe06g0848 534 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 97 532 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Hepe06g0848 534 ProSiteProfiles ARID domain profile. 240 331 IPR001606 GO:0003677(InterPro)
Hepe06g0848 534 Pfam Hsp20/alpha crystallin family 451 531 IPR002068 -
Hepe06g0848 534 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 434 534 IPR002068 -
Hepe06g0848 534 SMART bright_3 241 332 IPR001606 GO:0003677(InterPro)
Hepe06g0848 534 CDD ACD_sHsps_p23-like 453 529 - -
Hepe06g0848 534 FunFam AT-rich interactive domain-containing protein 3 240 339 - -
Hepe06g0848 534 MobiDBLite consensus disorder prediction 96 110 - -
Hepe06g0848 534 MobiDBLite consensus disorder prediction 111 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0848 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2371 Hepe-Chr1:88140496 Hepe06g0848 Hepe-Chr6:55404567 1.64e-148 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe03g0356 . 100 440 ARID Transcription Factor Family AT1G04880 58.7 3.5e-105 379.0
Hepe01g2371 . 135 414 ARID Transcription Factor Family AT1G20910 66.4 4.6e-101 365.2
Hepe06g0848 . 236 502 ARID Transcription Factor Family AT1G20910 60.7 3.7e-90 328.9
Hepe01g2311 . 16 309 ARID Transcription Factor Family AT1G76110 66.8 1.9e-111 399.4
Hepe01g2371 . 134 444 ARID Transcription Factor Family AT1G76510 72.8 3.9e-125 445.3
Hepe06g0848 . 223 532 ARID Transcription Factor Family AT1G76510 62.5 1.3e-109 393.7
Hepe02g1572 . 2 770 ARID Transcription Factor Family AT3G43240 59.0 7.6e-262 900.2
Hepe03g1390 . 2 772 ARID Transcription Factor Family AT3G43240 57.7 1.5e-257 885.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55752 PF00011 HSP20 9.00E-06 CL0190 Hepe TR