Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0848 ATGTACGTAGAAACCCCACAGAAGATCAAAGCAGCAATTTCTGTTTCTACCGCTCGTTCTTGCTTTCCCAGTTGTAGAATTATTCTCCCTTTGGAACCGGAGATGTGTGATGCGAAGGAGAAACTGAATTTTGCACAAGATGTTCCAGTTGCTGTAAGTGAAGGCAACCAAGTTGATTCAAAAGATGAGCTCCATGATTCTCTCCCTGTGCCAGCTGAAAATAAGATTGATTCACCCGAGACTCATGTACAGGAAGTTGTACCTCCTGAGGATGATAATTTAGATAAACCTACGATTCTTCAGCAATCAAATCAAGAGTCTGTGACTTCACTTCCCTTGGAACATGACAAAGAGTTGGATAAACCTGATGCAAAACCTGCTTCTGATGAGTTGCCCCCAATGGAGTTGGATCTAGATGCTGCTACTCCCAACATTCACCTGGAAACCGTTCAATCCTCGATGGATGCCAAATCTGAGGCCCTTGACATGGACATGCCTGAAACTAAAACTGGTCTTGATGATGCTTCAACAGAAAGTCATGATGAACCTGTAACTCCCCATCCAGTGTCACCTTGTATTAAAGCTGAAACAGAGATTTCCATAGAATTGAAGGTCAATGAAGAAAGTGTTACTACACCTCATAATGGGCATTCAAACATGAATCACTCGTTTGTTTTGGATGAAAATCATATTGCTGAAGGTGGTGAATCAGGAACAGAAGAAGATCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCCAAGTTTTACGGAGAGGGTCTGAATTGCCTCAAGCTATGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAGCCCCCAAAGACGTGTACGACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTTCTTGATTATGAGAGGCATAAAATCCATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACGCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAGGGTTGGCACTCACAGCGTCTTCTGGGAAATGGTGAAGTTAGTGACCCGATTATCAAGGATAAGAACTCACTTTCAATACAGAAAAGGGAAAAACAACTTAAAAGCATTGGTATTCTTAAACGTAAGAAACCATCTTACATGGAGCATTCCATGAAATCAGCGCGTACCAAATCATCAAAACCACAGTTGGACGTAGCAGTAGTGGATATTGGACAACCAGCTGATTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTGGTTCCCGGACTACTTCGCGAGGAGGTGCGTGTTCAGTCTGATCCGGCAGGACGCTTGGTTATTAGTGGTGAACCCGAACATCCGGATAATCCTTGGGGTGTCACACCCTTCAAAAAGGTAGTCAGCCTTCCATCAAGGATTGATCCACACCAGACTTCCGCCGTTGTCACCTTGCATGGACAGTTGTTTGTTCGCGTTCCGTTTGAACAGTTGGAATGA 1605 44.24 MYVETPQKIKAAISVSTARSCFPSCRIILPLEPEMCDAKEKLNFAQDVPVAVSEGNQVDSKDELHDSLPVPAENKIDSPETHVQEVVPPEDDNLDKPTILQQSNQESVTSLPLEHDKELDKPDAKPASDELPPMELDLDAATPNIHLETVQSSMDAKSEALDMDMPETKTGLDDASTESHDEPVTPHPVSPCIKAETEISIELKVNEESVTTPHNGHSNMNHSFVLDENHIAEGGESGTEEDQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIHGGELSVPIASNAEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSIQKREKQLKSIGILKRKKPSYMEHSMKSARTKSSKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 55404567 55411268 + Hsped.06g08480.1 Hepe06g0848 572223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0848 534 Gene3D - 240 337 IPR036431 GO:0003677(InterPro)
Hepe06g0848 534 MobiDBLite consensus disorder prediction 55 135 - -
Hepe06g0848 534 Pfam ARID/BRIGHT DNA binding domain 243 327 IPR001606 GO:0003677(InterPro)
Hepe06g0848 534 MobiDBLite consensus disorder prediction 166 181 - -
Hepe06g0848 534 Gene3D - 416 534 IPR008978 -
Hepe06g0848 534 CDD ARID 242 327 - -
Hepe06g0848 534 SUPERFAMILY HSP20-like chaperones 445 530 IPR008978 -
Hepe06g0848 534 MobiDBLite consensus disorder prediction 166 190 - -
Hepe06g0848 534 FunFam AT-rich interactive domain-containing protein 3 426 534 - -
Hepe06g0848 534 SMART ARID_2 237 327 - -
Hepe06g0848 534 MobiDBLite consensus disorder prediction 78 92 - -
Hepe06g0848 534 SUPERFAMILY ARID-like 235 339 IPR036431 GO:0003677(InterPro)
Hepe06g0848 534 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 97 532 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Hepe06g0848 534 ProSiteProfiles ARID domain profile. 240 331 IPR001606 GO:0003677(InterPro)
Hepe06g0848 534 Pfam Hsp20/alpha crystallin family 451 531 IPR002068 -
Hepe06g0848 534 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 434 534 IPR002068 -
Hepe06g0848 534 SMART bright_3 241 332 IPR001606 GO:0003677(InterPro)
Hepe06g0848 534 CDD ACD_sHsps_p23-like 453 529 - -
Hepe06g0848 534 FunFam AT-rich interactive domain-containing protein 3 240 339 - -
Hepe06g0848 534 MobiDBLite consensus disorder prediction 96 110 - -
Hepe06g0848 534 MobiDBLite consensus disorder prediction 111 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2371 Hepe-Chr1:88140496 Hepe06g0848 Hepe-Chr6:55404567 1.64e-148 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55752 PF00011 HSP20 9.00E-06 CL0190 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0848 - - - 0.0