Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0897 ATGGATTTCATAGCGAACCCATTTCGCTTTTCTTCATCCTCCTCGCCTTCGTTTGGGAATCTCTTTGAGAGAGTTAGAGAAATTTGCTGCTATGCGGTTTCTGCGATTCTTGGCAACATCTTGTCTGCGATCTTCACTTTCTTCTTCGCTCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGTGCTGTTTTCTCTATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCTGATGAATCAGGGATAGGCTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGACGACTAGTTCGAGAACGGATCGGTCCGGCCATATTGAGCGCGGTTCAAAGTCAGATGGGTGCTGCAGAGACAAGCTTTGATGACATCTCGAACATCTTTGACACAGGCAGCGCGAAAGGATTACCCGGGGACTCGGTTGAGAAAATTCCCAAGATTGTAGTATCTAAGAACAACAGTGTAGATGCTTATGGAGAGAAAGTCTGTTGTTCAGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGCTCTTGCCCTTTATGCAGAAGGGATCTGTAA 708 45.48 MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGAAETSFDDISNIFDTGSAKGLPGDSVEKIPKIVVSKNNSVDAYGEKVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 56252158 56255116 + Hsped.06g08970.1 Hepe06g0897 572272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0897 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Hepe06g0897 235 SUPERFAMILY RING/U-box 177 235 - -
Hepe06g0897 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Hepe06g0897 235 Pfam YMGG-like Gly-zipper 50 85 IPR027367 -
Hepe06g0897 235 CDD RING-H2_NIPL1-like 189 232 - -
Hepe06g0897 235 SMART ring_2 190 231 IPR001841 -
Hepe06g0897 235 Pfam Ring finger domain 190 232 IPR001841 -
Hepe06g0897 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
Hepe06g0897 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 235 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3366 Hepe-Chr2:83211672 Hepe06g0897 Hepe-Chr6:56252158 1.05e-10 dispersed
Hepe06g0897 Hepe-Chr6:56252158 Hepe10g0470 Hepe-Chr10:5431431 5.42e-16 dispersed
Hepe06g0897 Hepe-Chr6:56252158 Hepe05g1796 Hepe-Chr5:68222236 6.39e-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0897 - - - 0.0