Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe06g0897 | ATGGATTTCATAGCGAACCCATTTCGCTTTTCTTCATCCTCCTCGCCTTCGTTTGGGAATCTCTTTGAGAGAGTTAGAGAAATTTGCTGCTATGCGGTTTCTGCGATTCTTGGCAACATCTTGTCTGCGATCTTCACTTTCTTCTTCGCTCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGTGCTGTTTTCTCTATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCTGATGAATCAGGGATAGGCTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGACGACTAGTTCGAGAACGGATCGGTCCGGCCATATTGAGCGCGGTTCAAAGTCAGATGGGTGCTGCAGAGACAAGCTTTGATGACATCTCGAACATCTTTGACACAGGCAGCGCGAAAGGATTACCCGGGGACTCGGTTGAGAAAATTCCCAAGATTGTAGTATCTAAGAACAACAGTGTAGATGCTTATGGAGAGAAAGTCTGTTGTTCAGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGCTCTTGCCCTTTATGCAGAAGGGATCTGTAA | 708 | 45.48 | MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGAAETSFDDISNIFDTGSAKGLPGDSVEKIPKIVVSKNNSVDAYGEKVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 56252158 | 56255116 | + | Hsped.06g08970.1 | Hepe06g0897 | 572272 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe06g0897 | 235 | FunFam | NEP1-interacting protein-like 1 | 150 | 235 | - | - | |
Hepe06g0897 | 235 | SUPERFAMILY | RING/U-box | 177 | 235 | - | - | |
Hepe06g0897 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 190 | 232 | IPR001841 | - | |
Hepe06g0897 | 235 | Pfam | YMGG-like Gly-zipper | 50 | 85 | IPR027367 | - | |
Hepe06g0897 | 235 | CDD | RING-H2_NIPL1-like | 189 | 232 | - | - | |
Hepe06g0897 | 235 | SMART | ring_2 | 190 | 231 | IPR001841 | - | |
Hepe06g0897 | 235 | Pfam | Ring finger domain | 190 | 232 | IPR001841 | - | |
Hepe06g0897 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 21 | 234 | IPR044523 | - | |
Hepe06g0897 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 235 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g3366 | Hepe-Chr2:83211672 | Hepe06g0897 | Hepe-Chr6:56252158 | 1.05e-10 | dispersed | |
Hepe06g0897 | Hepe-Chr6:56252158 | Hepe10g0470 | Hepe-Chr10:5431431 | 5.42e-16 | dispersed | |
Hepe06g0897 | Hepe-Chr6:56252158 | Hepe05g1796 | Hepe-Chr5:68222236 | 6.39e-17 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe06g0897 | - | - | - | 0.0 |