Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0917 ATGTCCACTCCCTTGAGGAAGGTGTTTTGTAGAATTTCAGGGCTTGCAACTTCTCTGAGAAGAAACACAGCCCCTCACAGCAGAAGAATCTTTCACAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATTATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACAATACTCACATGGCATTTCACAAAGAGCTACACGGCACAGTCTCTGGACAGCTTAGCATATGGTCTTCGTCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTCTTGAATTCCACTGCTGAAATAACCACAGCTCAGGTTAAGCTTTCAGAATATGTAATGAAGAAGTACAGCAAGCCCGTGAATCAAGCAGAGCAAGTTGAGTTGTATGAAGCAATGAGGGATGTTACGTGGGCGATGTTTGCAAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTCCAGGCATTCCATCGAGATCATAGAAGCAACAATACATTTTATATTTACTCAGATCTTGCAAACTATTCTATCAGTGCCACTGAATCGTATAATATCAATCGGCTTTCGTCGGGGGAAGGGTGGTCGGAGCCACCCATACATGGCAATATTTCTGCAAAATGGTACCGGGAACCGCTTGATCCTATTACCGGCGAGAAGATCGGGAAAGCAAGGCAAATGCCACCAGAGGACTTGATTAATATTGCTGGCATTTCACAGGTGGCAGATGGTGTTGCCTCATGGCATGTTACGGTGAGCAAGTACATGGATACACCATTGCTTTCGGCAGCCCTGCCTGTTTCCGATGCTTCGAATGAAAGCATTGTTGCAGTGGTGGGCGTTACAACCGCACTTTATAGCGTAGGTCAACTTATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCCTGCTAAGAAATACATCAAGGGGTCCAAAGCTTATGATGGCTGTTGATTCCCAGGACGATGTGATTCGATTAGGAGCTGAGTGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGTCATGAGGTCCATGAAGAGAATGTCAAGCTTGGTGATCAGCAATATTACATCGACTCATTTTTTCTTAATCTAAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGCAAGGTCGATGAGAGAGCTTACAAAACATTGATTATACTGATTTCTGCATCCTTGTGCATCTTGGTTATTGGGTGTCTATGCATTTTGATTCTGACAAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGAAGGGCGGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTGAGGACGCCGATGGCTGCTGTAATTGGACTGCTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTTCTACGGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTCCGACTTCTCAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAATTTGACCTTGGACGAGAACTCGAAGGGCTTGTTGATATGTTCTCTGTGCAGTGCATTAACCATAATGTGGAGACTGTATTGGATCTCTCTGATGATATGCCGAAATTAGTTCGAGGAGACTCTGGTCGAGTTGTTCAAATATTCACAAATTTGATCAGCAATTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGTGAGACGTCAAATACTCTTAATGAAACGAGCAAGTTTTGTATGGATCAGAAGAAATTACGGTTTCCAAATCGGACAAAGATGAAACAGCAGGGAGACCACACAAGGAATGCCAGCAAGAGAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGGATTGATCCAAGCAAATGGGAGTCCGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCGACAACCCGAACGCATGGTGGCACGGGTCTTGGACTATGCATCGTACGTACCTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAAAACGGCCCAGGAACTCTAATGCGACTTTATTTGGTTCTCAGCACGCCTGTAGGCTCTACAGATCATCACTGTCAGCTTGATTTTGCAAAACATAATGCAGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACGTCACAGTGGCTTCGTAAAATCGGACTGCGCACTTTAGAAGCTTCGGAATGGAACGAACTAACACTAATCCTTCAGGAACTCTTTCAAGCCAGAAGTTCAGAAAGTAAAAAAGGATTTAGTCCACAGGATTCACTAGGTGAACCATTACGAGCAGAGTTGATGAGAATTAAAGATGTGAAAAGCCAAATATTCATCATTGTTGCCGATATCGGGATACTGGACTTGAGCACGGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGAAAAGCAAAATTTGCATGGATGTTAAACCACGATACGTCCAACGCCATAAAGATGGAGCTCCGGGGAAAAGGGCACATTATAATGAACAATAAGGCACTGTACAGAGCAAAAATGATTCATATTTTGGAAGCTGTTATGAAGGACAGAAATCTTGAGTTGCAGAGGAAAAATGCTTTAAGAACTGCATCAAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCTGATGATTCTGATGTATTTGAACTTGGCAATTCCAACTCTCAGTGTGCAACATTTCAAGTCAGAGACGGCCAAGAAGAAACGATAGCGGAACCACGTCAGTCACCATTTCTGCCCGTTAACAATAGCTTAGTTGAGTTAACTCATGTACATTCGAGTGAGAGTAATGTGAGGACCGGCGATCCATGTGACACTAGACAAAGCTCATCGAAGCCTCAATGTCTAAGTTCTGAATCCAATGGACAGAACTTGGGATGCAACTATCCTAAAAGCCAAGGAGAATCACATTCTAAGGACGTTCATGGTAAAAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCAGTTCTCCAAAGAGTAACGACCATAATGCTCGAAAAGATGGGAGCCACGGTCATTGCTGTCGGAGACGGACTGCTGGCTGTAGAAGCTCTGACTGCCATGCTCAGTGATGAAGAGCAAAGAAGAGAATGCCCCATAAGATATGACTTGATATTAATGGATTGCCAAATGCCAAAGATGGACGGCTACGAAGCAACAAAAGCAATTAGAAAGCTAGAGGTGGGAACGAGCCTTCACATTCCGATTGTAGCATTGACAGCCCACGCAATGTCGTCGGATGAAGCCAAATGCTTGGAGGTGGGAATGGATGCATACCTGACAAAGCCAATTGACTATAAGCTGATGGTATCCACCATACTTTCCCTCACTCAAAGAAGAGGCTAA 3603 43.3 MSTPLRKVFCRISGLATSLRRNTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMKKYSKPVNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATESYNINRLSSGEGWSEPPIHGNISAKWYREPLDPITGEKIGKARQMPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSRGPKLMMAVDSQDDVIRLGAEWLQKTYGNNFPPGHEVHEENVKLGDQQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLIILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLNETSKFCMDQKKLRFPNRTKMKQQGDHTRNASKRDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVGSTDHHCQLDFAKHNAVVLLALRGSMSRLITSQWLRKIGLRTLEASEWNELTLILQELFQARSSESKKGFSPQDSLGEPLRAELMRIKDVKSQIFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKALYRAKMIHILEAVMKDRNLELQRKNALRTASKEGDYHECLEIDSTQFETASSDDSDVFELGNSNSQCATFQVRDGQEETIAEPRQSPFLPVNNSLVELTHVHSSESNVRTGDPCDTRQSSSKPQCLSSESNGQNLGCNYPKSQGESHSKDVHGKKSLEGLRILLAEDTPVLQRVTTIMLEKMGATVIAVGDGLLAVEALTAMLSDEEQRRECPIRYDLILMDCQMPKMDGYEATKAIRKLEVGTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQRRG 1200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 56660653 56667764 - Hsped.06g09170.1 Hepe06g0917 572292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0917 1200 CDD HisKA 484 545 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe06g0917 1200 FunFam Histidine kinase 1-like protein 471 550 - -
Hepe06g0917 1200 MobiDBLite consensus disorder prediction 1007 1057 - -
Hepe06g0917 1200 Gene3D - 1044 1198 - -
Hepe06g0917 1200 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe06g0917 1200 CDD REC_hyHK_CKI1_RcsC-like 1067 1192 - -
Hepe06g0917 1200 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 745 IPR003594 -
Hepe06g0917 1200 ProSiteProfiles Histidine kinase domain profile. 490 748 IPR005467 -
Hepe06g0917 1200 SMART REC_2 1065 1192 IPR001789 GO:0000160(InterPro)
Hepe06g0917 1200 MobiDBLite consensus disorder prediction 1007 1049 - -
Hepe06g0917 1200 SMART HKATPase_4 596 748 IPR003594 -
Hepe06g0917 1200 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 471 550 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe06g0917 1200 SUPERFAMILY CheY-like 1063 1198 IPR011006 -
Hepe06g0917 1200 PANTHER TWO-COMPONENT HISTIDINE KINASE 57 752 IPR050736 -
Hepe06g0917 1200 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 744 IPR036890 -
Hepe06g0917 1200 Gene3D - 471 550 - -
Hepe06g0917 1200 Gene3D - 551 749 IPR036890 -
Hepe06g0917 1200 PRINTS Bacterial sensor protein C-terminal signature 673 687 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe06g0917 1200 PRINTS Bacterial sensor protein C-terminal signature 691 701 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe06g0917 1200 PRINTS Bacterial sensor protein C-terminal signature 708 726 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe06g0917 1200 ProSiteProfiles Response regulatory domain profile. 1066 1196 IPR001789 GO:0000160(InterPro)
Hepe06g0917 1200 SMART HisKA_10 483 549 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe06g0917 1200 Pfam Response regulator receiver domain 1067 1191 IPR001789 GO:0000160(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0917 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1628 Hepe-Chr5:66138906 Hepe06g0917 Hepe-Chr6:56660653 1.44e-11 dispersed
Hepe06g0917 Hepe-Chr6:56660653 Hepe08g0395 Hepe-Chr8:3532040 2.78e-37 dispersed
Hepe08g2256 Hepe-Chr8:62305622 Hepe06g0917 Hepe-Chr6:56660653 2.73e-70 transposed
Hepe06g0917 Hepe-Chr6:56660653 Hepe08g2051 Hepe-Chr8:57568600 2.50e-28 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0917 . 5 1197 Histidine Kinase Gene Family AT2G17820 65.5 0.0e+00 1455.7
Hepe01g0254 . 21 1006 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1343.9
Hepe02g2600 . 24 984 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1326.6
Hepe02g0293 . 279 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.6e-276 948.7
Hepe03g1107 . 59 1008 Histidine Kinase Gene Family AT2G01830 53.0 3.2e-274 941.8
Hepe08g0395 . 304 1262 Histidine Kinase Gene Family AT2G01830 52.5 4.3e-271 931.4
Hepe01g1937 . 1 996 Histidine Kinase Gene Family AT5G10720 58.3 2.2e-295 1011.9
Hepe08g1559 . 1 1119 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1818.5
Hepe08g1551 . 19 1160 Histidine Kinase Gene Family AT1G09570 70.8 0.0e+00 1615.9
Hepe02g0311 . 18 1110 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1206.4
Hepe05g1374 . 45 1130 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1187.6
Hepe05g1374 . 41 1071 Histidine Kinase Gene Family AT2G18790 79.3 0.0e+00 1657.1
Hepe07g1806 . 24 1046 Histidine Kinase Gene Family AT2G18790 59.7 0.0e+00 1219.1
Hepe02g0311 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.8 0.0e+00 1077.4
Hepe08g1559 . 21 1054 Histidine Kinase Gene Family AT2G18790 52.3 5.4e-312 1067.4
Hepe08g1551 . 45 1094 Histidine Kinase Gene Family AT2G18790 50.3 5.6e-301 1030.8
Hepe02g0311 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.2 0.0e+00 1362.8
Hepe05g1374 . 45 1132 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1137.5
Hepe08g1559 . 9 1113 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1114.0
Hepe05g1374 . 41 1132 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1699.5
Hepe07g1806 . 36 1108 Histidine Kinase Gene Family AT4G16250 57.7 0.0e+00 1255.7
Hepe02g0311 . 26 1113 Histidine Kinase Gene Family AT4G16250 53.0 0.0e+00 1114.8
Hepe08g1559 . 8 1114 Histidine Kinase Gene Family AT4G16250 51.8 0.0e+00 1113.2
Hepe07g1806 . 36 1124 Histidine Kinase Gene Family AT4G18130 62.6 0.0e+00 1346.6
Hepe05g1374 . 49 1141 Histidine Kinase Gene Family AT4G18130 58.3 0.0e+00 1263.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55759 PF02518 HATPase_c 6.20E-23 CL0025 Hepe TR