Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0942 ATGGGCAGGATGGGCGGTAGGCAAAGGACTTACAGCGCCAATTCCACCGATTACAACCTTCTTGAAGAGATTGGTTATGGTGCTAGTGCTACTGTTTTTCGAGCGATCTATATTCCCTCTAATGAAGTTGTTGCTATCAAGTGTTTGGATCTTGATCGCTGTAATAGTAATCTAGATGATATACGTAGGGAGGCTCAAACAATGAGTTTGATAGATCATCCGAACCTTGTAAGGGCTTTTTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAGGGCTCTTGTTTGCACCTAATAAAGACAGCGTACACAGATGGCTTTGAAGAGGTTACTATTGGTTCTATCCTGAAAGAAACTCTTAAAGCTTTGGAGTACCTTCATCGCCAGGGGCACATACATCGGGATGTGAAGGCTGGAAATATACTACTTGATTGTAATGGGGCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCGTGCATGTTTGATACAGGTGATAGACAACGCTCCAGAAATACCTTTGTGGGAACCCCATGCTGGATGGCGCCAGAGGTATTGCAACCAGGAACTGGATATAATTCCAAGGCTGATATTTGGTCCTTTGGTATTACAGCATTGGAGTTGGCTCATGGTCATGCACCATTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGATAGAGATAAAAAGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAGCCAAGAGGCCAACAGCTGAGAAACTTTTAAAGCACTCTTTTTTCAAGAATGCTAAGCCTCCGGAGTTTTCTTTGAAGAAATTATTCTCTAACTTGCCTCCTCTTTCACATCGTGTAAAGGACCTGCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCATTATCACAGAGTGAGTACCAGCGAGGAGTTAGCGCATGGAACTTTGATGTCGAGGATTTGAAAACACAAGCTTCCCTGGTGAATGATGATATGGCAGAGATGAAGGAAGAGGAGGAGAATATAAATTCTTGTAGTTTTAAGGATGCTTTTTATCCTCAATCTAGTTTGAGGAATTTCAATTCATGTAGTGAATCACCTCAGGATGAGCATGGAGTAGGGGAAAGTGGTCAGGGATTGCCACAGTCTGGGTTCCAAGAAAAAACTGGATGGAAGAGAAATGGAACTAGCACTGAAGCAGAAGCATCTACCTCTGGCCAAGACATTGTGCAAGGCAAGACCAAAACCCAAATGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTCTACCTGGTAGTGTGCTTAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATCTCCCGAAAAAAATCGTCGAGAAGCACGGCAAGTTCCAAGCTTCAGTGGTCCACTTATGCTGCCAAACCGCGCCTCAGCAAACAGCCTATCAGCTCCCATAAAACCTTCTGGAGGGTTTAGAGATTCAATGGATGACAAAATGAAAGCTAATCTTGTGCAAATTAAGGGGCGTTTTTCAGTGACGTCAGAGAACCTAGATCTCGTAAAGGTAAGGTTATACGATTATCTTAATTTCTTAAATAAACTGACTGGAACTAACTTGAAAGCTGGCTTAGGATATTCCATTGAGCACTGTTTCACGCCGGTCTTCACAGAACTCCCCTCTACGAAAGTCAGCTAG 1782 42.99 MGRMGGRQRTYSANSTDYNLLEEIGYGASATVFRAIYIPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAFCSFVVERNLWVVMPFMAEGSCLHLIKTAYTDGFEEVTIGSILKETLKALEYLHRQGHIHRDVKAGNILLDCNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQAKRPTAEKLLKHSFFKNAKPPEFSLKKLFSNLPPLSHRVKDLQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKTQASLVNDDMAEMKEEEENINSCSFKDAFYPQSSLRNFNSCSESPQDEHGVGESGQGLPQSGFQEKTGWKRNGTSTEAEASTSGQDIVQGKTKTQMPKGRQTQSGPLLPGSVLSHSLSERVRGSERFDSEIQPSPEKNRREARQVPSFSGPLMLPNRASANSLSAPIKPSGGFRDSMDDKMKANLVQIKGRFSVTSENLDLVKVRLYDYLNFLNKLTGTNLKAGLGYSIEHCFTPVFTELPSTKVS 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 57015303 57029409 + Hsped.06g09420.1 Hepe06g0942 572317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0942 593 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g0942 593 Gene3D Transferase(Phosphotransferase) domain 1 99 331 - -
Hepe06g0942 593 SMART serkin_6 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g0942 593 CDD STKc_OSR1_SPAK 17 279 - -
Hepe06g0942 593 MobiDBLite consensus disorder prediction 404 458 - -
Hepe06g0942 593 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Hepe06g0942 593 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 9 552 IPR047173 GO:0043539(InterPro)
Hepe06g0942 593 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Hepe06g0942 593 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g0942 593 FunFam Serine/threonine-protein kinase BLUS1 7 95 - -
Hepe06g0942 593 MobiDBLite consensus disorder prediction 466 490 - -
Hepe06g0942 593 SUPERFAMILY Protein kinase-like (PK-like) 17 334 IPR011009 -
Hepe06g0942 593 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 99 329 - -
Hepe06g0942 593 Coils Coil 343 363 - -
Hepe06g0942 593 MobiDBLite consensus disorder prediction 386 523 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0942 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1286 Hepe-Chr2:16084032 Hepe06g0942 Hepe-Chr6:57015303 7.15e-158 dispersed
Hepe02g3102 Hepe-Chr2:80162758 Hepe06g0942 Hepe-Chr6:57015303 2.99e-101 dispersed
Hepe05g1625 Hepe-Chr5:66089647 Hepe06g0942 Hepe-Chr6:57015303 8.41e-104 dispersed
Hepe06g0942 Hepe-Chr6:57015303 Hepe10g1802 Hepe-Chr10:54764390 2.09e-53 dispersed
Hepe06g0942 Hepe-Chr6:57015303 Hepe02g1817 Hepe-Chr2:27204815 1.35e-158 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe01g1400 . 1 694 MAP Kinase Kinase Kinase Kinase AT1G53165 62.9 3.2e-222 768.5
Hepe10g1802 . 259 519 MAP Kinase Kinase Kinase Kinase AT1G53165 52.3 5.8e-67 252.7
Hepe01g1400 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.5 1.6e-229 792.7
Hepe10g1802 . 259 519 MAP Kinase Kinase Kinase Kinase AT3G15220 50.8 2.6e-67 253.8
Hepe10g1802 . 4 824 MAP Kinase Kinase Kinase Kinase AT1G69220 59.9 5.0e-243 837.8
Hepe02g1817 . 76 655 MAP Kinase Kinase Kinase Kinase AT5G14720 56.4 1.1e-187 653.7
Hepe02g3102 . 2 525 MAP Kinase Kinase Kinase Kinase AT5G14720 61.9 6.3e-175 611.3
Hepe06g0942 . 6 546 MAP Kinase Kinase Kinase Kinase AT5G14720 51.1 3.4e-144 509.2
Hepe05g1625 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 50.6 1.5e-96 350.9
Hepe06g0942 . 7 550 MAP Kinase Kinase Kinase Kinase AT4G24100 68.7 5.5e-201 698.0
Hepe02g1817 . 81 429 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 4.2e-132 469.2
Hepe06g0942 . 11 550 MAP Kinase Kinase Kinase Kinase AT4G10730 69.9 9.3e-206 713.8
Hepe02g1817 . 82 450 MAP Kinase Kinase Kinase Kinase AT4G10730 63.7 3.9e-135 479.2
Hepe02g1817 . 76 447 MAP Kinase Kinase Kinase Kinase AT1G70430 65.2 2.9e-139 492.7
Hepe02g1286 . 4 494 MAP Kinase Kinase Kinase Kinase AT1G70430 51.6 2.2e-134 476.5
Hepe06g0942 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.1 1.7e-118 423.7
Hepe02g1286 . 1 678 MAP Kinase Kinase Kinase Kinase AT1G79640 60.5 3.9e-217 751.5
Hepe02g1817 . 81 428 MAP Kinase Kinase Kinase Kinase AT1G79640 68.1 7.2e-147 518.1
Hepe02g1817 . 76 402 MAP Kinase Kinase Kinase Kinase AT1G23700 57.0 2.6e-98 356.3
Hepe02g1286 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 1.8e-86 317.0
Hepe06g0942 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.2 5.4e-75 278.9
Hepe02g3102 . 2 172 MAP Kinase Kinase Kinase Kinase AT1G23700 58.0 3.0e-49 193.4
Hepe05g1625 . 32 458 MAP Kinase Kinase Kinase Kinase AT4G14480 57.0 2.5e-136 482.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005064 3 0 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72868 PF00069 Pkinase 2.80E-60 CL0016 Hepe PK