Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0942 ATGGGCAGGATGGGCGGTAGGCAAAGGACTTACAGCGCCAATTCCACCGATTACAACCTTCTTGAAGAGATTGGTTATGGTGCTAGTGCTACTGTTTTTCGAGCGATCTATATTCCCTCTAATGAAGTTGTTGCTATCAAGTGTTTGGATCTTGATCGCTGTAATAGTAATCTAGATGATATACGTAGGGAGGCTCAAACAATGAGTTTGATAGATCATCCGAACCTTGTAAGGGCTTTTTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAGGGCTCTTGTTTGCACCTAATAAAGACAGCGTACACAGATGGCTTTGAAGAGGTTACTATTGGTTCTATCCTGAAAGAAACTCTTAAAGCTTTGGAGTACCTTCATCGCCAGGGGCACATACATCGGGATGTGAAGGCTGGAAATATACTACTTGATTGTAATGGGGCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCGTGCATGTTTGATACAGGTGATAGACAACGCTCCAGAAATACCTTTGTGGGAACCCCATGCTGGATGGCGCCAGAGGTATTGCAACCAGGAACTGGATATAATTCCAAGGCTGATATTTGGTCCTTTGGTATTACAGCATTGGAGTTGGCTCATGGTCATGCACCATTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGATAGAGATAAAAAGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAGCCAAGAGGCCAACAGCTGAGAAACTTTTAAAGCACTCTTTTTTCAAGAATGCTAAGCCTCCGGAGTTTTCTTTGAAGAAATTATTCTCTAACTTGCCTCCTCTTTCACATCGTGTAAAGGACCTGCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCATTATCACAGAGTGAGTACCAGCGAGGAGTTAGCGCATGGAACTTTGATGTCGAGGATTTGAAAACACAAGCTTCCCTGGTGAATGATGATATGGCAGAGATGAAGGAAGAGGAGGAGAATATAAATTCTTGTAGTTTTAAGGATGCTTTTTATCCTCAATCTAGTTTGAGGAATTTCAATTCATGTAGTGAATCACCTCAGGATGAGCATGGAGTAGGGGAAAGTGGTCAGGGATTGCCACAGTCTGGGTTCCAAGAAAAAACTGGATGGAAGAGAAATGGAACTAGCACTGAAGCAGAAGCATCTACCTCTGGCCAAGACATTGTGCAAGGCAAGACCAAAACCCAAATGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTCTACCTGGTAGTGTGCTTAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATCTCCCGAAAAAAATCGTCGAGAAGCACGGCAAGTTCCAAGCTTCAGTGGTCCACTTATGCTGCCAAACCGCGCCTCAGCAAACAGCCTATCAGCTCCCATAAAACCTTCTGGAGGGTTTAGAGATTCAATGGATGACAAAATGAAAGCTAATCTTGTGCAAATTAAGGGGCGTTTTTCAGTGACGTCAGAGAACCTAGATCTCGTAAAGGTAAGGTTATACGATTATCTTAATTTCTTAAATAAACTGACTGGAACTAACTTGAAAGCTGGCTTAGGATATTCCATTGAGCACTGTTTCACGCCGGTCTTCACAGAACTCCCCTCTACGAAAGTCAGCTAG 1782 42.99 MGRMGGRQRTYSANSTDYNLLEEIGYGASATVFRAIYIPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAFCSFVVERNLWVVMPFMAEGSCLHLIKTAYTDGFEEVTIGSILKETLKALEYLHRQGHIHRDVKAGNILLDCNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQAKRPTAEKLLKHSFFKNAKPPEFSLKKLFSNLPPLSHRVKDLQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKTQASLVNDDMAEMKEEEENINSCSFKDAFYPQSSLRNFNSCSESPQDEHGVGESGQGLPQSGFQEKTGWKRNGTSTEAEASTSGQDIVQGKTKTQMPKGRQTQSGPLLPGSVLSHSLSERVRGSERFDSEIQPSPEKNRREARQVPSFSGPLMLPNRASANSLSAPIKPSGGFRDSMDDKMKANLVQIKGRFSVTSENLDLVKVRLYDYLNFLNKLTGTNLKAGLGYSIEHCFTPVFTELPSTKVS 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 57015303 57029409 + Hsped.06g09420.1 Hepe06g0942 572317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0942 593 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g0942 593 Gene3D Transferase(Phosphotransferase) domain 1 99 331 - -
Hepe06g0942 593 SMART serkin_6 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g0942 593 CDD STKc_OSR1_SPAK 17 279 - -
Hepe06g0942 593 MobiDBLite consensus disorder prediction 404 458 - -
Hepe06g0942 593 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Hepe06g0942 593 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 9 552 IPR047173 GO:0043539(InterPro)
Hepe06g0942 593 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Hepe06g0942 593 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g0942 593 FunFam Serine/threonine-protein kinase BLUS1 7 95 - -
Hepe06g0942 593 MobiDBLite consensus disorder prediction 466 490 - -
Hepe06g0942 593 SUPERFAMILY Protein kinase-like (PK-like) 17 334 IPR011009 -
Hepe06g0942 593 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 99 329 - -
Hepe06g0942 593 Coils Coil 343 363 - -
Hepe06g0942 593 MobiDBLite consensus disorder prediction 386 523 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1286 Hepe-Chr2:16084032 Hepe06g0942 Hepe-Chr6:57015303 7.15e-158 dispersed
Hepe02g3102 Hepe-Chr2:80162758 Hepe06g0942 Hepe-Chr6:57015303 2.99e-101 dispersed
Hepe05g1625 Hepe-Chr5:66089647 Hepe06g0942 Hepe-Chr6:57015303 8.41e-104 dispersed
Hepe06g0942 Hepe-Chr6:57015303 Hepe10g1802 Hepe-Chr10:54764390 2.09e-53 dispersed
Hepe06g0942 Hepe-Chr6:57015303 Hepe02g1817 Hepe-Chr2:27204815 1.35e-158 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72868 PF00069 Pkinase 2.80E-60 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0942 - - - 0.0