Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g0960 ATGGCAGCGTCAATGGCGCCGTTTAAGCTCACGGAAGGAGCAGTCATGTTGATATGCAAGAGGGAATCGGTGGCAGAGACGTTTCAGCCGGTTGTACAAGTGATCGACTTGAAATTGGTTAACACTACGCAGCAATCGGGCAACGAGAGGTACAGATTGTTGCTTTCTGATGGAACCCATTACCAACAAGGAATGTTGGGCACTCAGCTTAATGAATTGGTGAAGGCTGGGAAATTGCAGAAAGGCTCCATCATTCAACTGCGGCAGTATATTTGTAACCCCGTTCAAGAACGCTTGATTATAATTGTCGTTGAGTTGGCTGTGATAGTGGAAGTGTGTGAATTTATTGGCGAGCCTGTACCAGCAACAAGATCAGTAACAGGTGCATTTGGTGGAAACCCCCAATCCTCTGTGGGGGCTTCACCCTCCAGTGGATTAGTTGGTAAGGTGAATGTATCTAGTGCGTCTTTTGAGCAGCCGAAAGTGAATCAATCACATGTACCGCATGTAGGATCTTATTCTAACACTCCTGAGCCTGGAAGGTACACTGCATCAGTTGCACCTCCTCTTTACTCTAATAAGACAGATCCTGGAACAAGGTTTAACGGGTCATCTCCTTTAATTGGGTCGTCATATGGTGATCAGAAGATGGCATATCACAACAATGGATCAGATGTTCCAAGGCCACCTCTAAACGCTTATGCCCGTCCTCAGCCAACATATCAGCAGCCACCTCCAATGTACAGTAACAGAGGACCGGTAGCAAAAAACGAAGCTGCCCCAAGGATAATGCCTATTACTGCTCTTAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACGTCAAAAGGAGAGCTTAGACACTACAATAATCCTCGTGGTGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCACACCGTGGAGAAATACGAGTAACATGCTTCAATTCGGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTTTAACCATCTAAAAAATGACTTTGAAATATTTCTTGAGAGCACATCAACAATTCAACCTTGCTTTGAGGATGACCAGTCGATCCCCCAACAACAGTTTCATTTCCATCAGATTAATGAGATTGAAGGCATGGACAGCAACAGTGTTGTAGATCTAATTGGTGTTGTTACCTCAATTAATCCTGCAACTTCACTAATGAGAAAAAATGGTACTGAGACTCAGAAGAGATCCCTTCAATTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAAAGATTGCAAAATATGTGTGACTCGGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTCGAGTGAGTGACTTCAACGGGAAGGCATTGGGAACCATTTCAACAAGTCAGCTTTTTATTGAGCCAGATTTCCCTGAGGCTCGTCCGCTGAGAGAGTGGTTTGAGAAGGAAGGGAAGAGTACTCCTTCTGTCTCTATATCCAGGGAAGTTTCTAGTGTGGGCAGGACAGATGTCCGGAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCAGAGAAACCAGATTGGATTACTGTTAGTGCAACTGTTTCATTTATTAAGGTTGACAACTTCTGTTACACAGCATGTCCTATCATGATCGGGGACCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACAGGTGTGATCAGTCGGTTGACGAATGTGATTACAGGTACATTCTGCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATTATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGGTCAACAGTGGTGAAAGCAGACAGCATTAATTTTGCGACCGAGTCCAGGTTTCTTATAGATTTGATGGAAAAGCTCAGGGCAGAGAACACTAGTACCATTACCCCTATTAACCCTATTACCCCAAAGAAAGAAAGTACCATGCACAATTCCGGATTTCATAACCCTGGAGCTGGGGATGTAGGTGGTGGACAGTTCGTGTCACCCGTTCGAAATAGTAGTAATGTTGGCAGAGAATACGGTACATCAAACCAAGGTGTTCAGTATGGGAACCAGTACAACAGTTCTAGGCCTTCTCAATCCACACCACTTAACTTGCACACGTATTGCAACAGCTGTGGGGGCTCTGGTCACAGCTCAACAAACTGCCCGAGTATCATGAGCGGTCCTGCGCCTCCCGTTGGAGGAGGTATGTATTCAAATAGAGGTTCTGCCCCTTCTGGTGGTACCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCACTGGGCTCGGGATTGCCCTGGTTTGGCCACTGCCCCTTCAGCTTATGGTAATAGTGGCTTCACGGCAAGGTGA 2595 44.12 MAASMAPFKLTEGAVMLICKRESVAETFQPVVQVIDLKLVNTTQQSGNERYRLLLSDGTHYQQGMLGTQLNELVKAGKLQKGSIIQLRQYICNPVQERLIIIVVELAVIVEVCEFIGEPVPATRSVTGAFGGNPQSSVGASPSSGLVGKVNVSSASFEQPKVNQSHVPHVGSYSNTPEPGRYTASVAPPLYSNKTDPGTRFNGSSPLIGSSYGDQKMAYHNNGSDVPRPPLNAYARPQPTYQQPPPMYSNRGPVAKNEAAPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAHRGEIRVTCFNSVADQFYNQIESGKVYFISKGSLKPAQKNFNHLKNDFEIFLESTSTIQPCFEDDQSIPQQQFHFHQINEIEGMDSNSVVDLIGVVTSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSGRVSDFNGKALGTISTSQLFIEPDFPEARPLREWFEKEGKSTPSVSISREVSSVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKADSINFATESRFLIDLMEKLRAENTSTITPINPITPKKESTMHNSGFHNPGAGDVGGGQFVSPVRNSSNVGREYGTSNQGVQYGNQYNSSRPSQSTPLNLHTYCNSCGGSGHSSTNCPSIMSGPAPPVGGGMYSNRGSAPSGGTSGECFKCHQTGHWARDCPGLATAPSAYGNSGFTAR 864
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 57235377 57239960 + Hsped.06g09600.1 Hepe06g0960 572335
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g0960 864 Gene3D - 513 705 IPR012340 -
Hepe06g0960 864 SMART c2hcfinal6 832 848 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe06g0960 864 SMART c2hcfinal6 788 804 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe06g0960 864 Pfam OB-fold nucleic acid binding domain 276 360 IPR004365 GO:0003676(InterPro)
Hepe06g0960 864 CDD RPA1N 13 110 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Hepe06g0960 864 FunFam Replication protein A subunit 375 513 - -
Hepe06g0960 864 FunFam Replication protein A subunit 514 705 - -
Hepe06g0960 864 Gene3D - 8 123 IPR012340 -
Hepe06g0960 864 Pfam Replication factor-A C terminal domain 547 698 IPR013955 -
Hepe06g0960 864 Pfam Zinc knuckle 832 847 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe06g0960 864 FunFam Replication protein A subunit 9 123 - -
Hepe06g0960 864 FunFam Replication protein A subunit 262 372 - -
Hepe06g0960 864 SUPERFAMILY Nucleic acid-binding proteins 262 375 IPR012340 -
Hepe06g0960 864 Gene3D - 375 512 IPR012340 -
Hepe06g0960 864 CDD RPA1_DBD_B 397 504 - -
Hepe06g0960 864 SUPERFAMILY Nucleic acid-binding proteins 381 509 IPR012340 -
Hepe06g0960 864 SUPERFAMILY Retrovirus zinc finger-like domains 819 851 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe06g0960 864 Pfam Replication factor-A protein 1, N-terminal domain 10 110 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Hepe06g0960 864 CDD RPA1_DBD_C 531 704 IPR047192 -
Hepe06g0960 864 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Hepe06g0960 864 Pfam Replication protein A OB domain 386 489 IPR031657 -
Hepe06g0960 864 PANTHER REPLICATION FACTOR A 1, RFA1 265 715 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Hepe06g0960 864 MobiDBLite consensus disorder prediction 188 202 - -
Hepe06g0960 864 ProSiteProfiles Zinc finger CCHC-type profile. 833 847 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe06g0960 864 MobiDBLite consensus disorder prediction 158 202 - -
Hepe06g0960 864 ProSiteProfiles Zinc finger CCHC-type profile. 789 804 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe06g0960 864 MobiDBLite consensus disorder prediction 756 779 - -
Hepe06g0960 864 NCBIfam replication factor-a protein 1 (rpa1) 240 704 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Hepe06g0960 864 SUPERFAMILY Nucleic acid-binding proteins 528 705 IPR012340 -
Hepe06g0960 864 Gene3D - 786 852 - -
Hepe06g0960 864 CDD RPA1_DBD_A 265 368 - -
Hepe06g0960 864 Gene3D - 262 371 IPR012340 -
Hepe06g0960 864 MobiDBLite consensus disorder prediction 158 181 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0960 Hepe-Chr6:57235377 Hepe08g2687 Hepe-Chr8:68915234 2.18e-244 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g0960 K07466 - csv:101211358 1505.35