Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe06g0960 | ATGGCAGCGTCAATGGCGCCGTTTAAGCTCACGGAAGGAGCAGTCATGTTGATATGCAAGAGGGAATCGGTGGCAGAGACGTTTCAGCCGGTTGTACAAGTGATCGACTTGAAATTGGTTAACACTACGCAGCAATCGGGCAACGAGAGGTACAGATTGTTGCTTTCTGATGGAACCCATTACCAACAAGGAATGTTGGGCACTCAGCTTAATGAATTGGTGAAGGCTGGGAAATTGCAGAAAGGCTCCATCATTCAACTGCGGCAGTATATTTGTAACCCCGTTCAAGAACGCTTGATTATAATTGTCGTTGAGTTGGCTGTGATAGTGGAAGTGTGTGAATTTATTGGCGAGCCTGTACCAGCAACAAGATCAGTAACAGGTGCATTTGGTGGAAACCCCCAATCCTCTGTGGGGGCTTCACCCTCCAGTGGATTAGTTGGTAAGGTGAATGTATCTAGTGCGTCTTTTGAGCAGCCGAAAGTGAATCAATCACATGTACCGCATGTAGGATCTTATTCTAACACTCCTGAGCCTGGAAGGTACACTGCATCAGTTGCACCTCCTCTTTACTCTAATAAGACAGATCCTGGAACAAGGTTTAACGGGTCATCTCCTTTAATTGGGTCGTCATATGGTGATCAGAAGATGGCATATCACAACAATGGATCAGATGTTCCAAGGCCACCTCTAAACGCTTATGCCCGTCCTCAGCCAACATATCAGCAGCCACCTCCAATGTACAGTAACAGAGGACCGGTAGCAAAAAACGAAGCTGCCCCAAGGATAATGCCTATTACTGCTCTTAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACGTCAAAAGGAGAGCTTAGACACTACAATAATCCTCGTGGTGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCACACCGTGGAGAAATACGAGTAACATGCTTCAATTCGGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTTTAACCATCTAAAAAATGACTTTGAAATATTTCTTGAGAGCACATCAACAATTCAACCTTGCTTTGAGGATGACCAGTCGATCCCCCAACAACAGTTTCATTTCCATCAGATTAATGAGATTGAAGGCATGGACAGCAACAGTGTTGTAGATCTAATTGGTGTTGTTACCTCAATTAATCCTGCAACTTCACTAATGAGAAAAAATGGTACTGAGACTCAGAAGAGATCCCTTCAATTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAAAGATTGCAAAATATGTGTGACTCGGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTCGAGTGAGTGACTTCAACGGGAAGGCATTGGGAACCATTTCAACAAGTCAGCTTTTTATTGAGCCAGATTTCCCTGAGGCTCGTCCGCTGAGAGAGTGGTTTGAGAAGGAAGGGAAGAGTACTCCTTCTGTCTCTATATCCAGGGAAGTTTCTAGTGTGGGCAGGACAGATGTCCGGAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCAGAGAAACCAGATTGGATTACTGTTAGTGCAACTGTTTCATTTATTAAGGTTGACAACTTCTGTTACACAGCATGTCCTATCATGATCGGGGACCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACAGGTGTGATCAGTCGGTTGACGAATGTGATTACAGGTACATTCTGCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATTATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGGTCAACAGTGGTGAAAGCAGACAGCATTAATTTTGCGACCGAGTCCAGGTTTCTTATAGATTTGATGGAAAAGCTCAGGGCAGAGAACACTAGTACCATTACCCCTATTAACCCTATTACCCCAAAGAAAGAAAGTACCATGCACAATTCCGGATTTCATAACCCTGGAGCTGGGGATGTAGGTGGTGGACAGTTCGTGTCACCCGTTCGAAATAGTAGTAATGTTGGCAGAGAATACGGTACATCAAACCAAGGTGTTCAGTATGGGAACCAGTACAACAGTTCTAGGCCTTCTCAATCCACACCACTTAACTTGCACACGTATTGCAACAGCTGTGGGGGCTCTGGTCACAGCTCAACAAACTGCCCGAGTATCATGAGCGGTCCTGCGCCTCCCGTTGGAGGAGGTATGTATTCAAATAGAGGTTCTGCCCCTTCTGGTGGTACCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCACTGGGCTCGGGATTGCCCTGGTTTGGCCACTGCCCCTTCAGCTTATGGTAATAGTGGCTTCACGGCAAGGTGA | 2595 | 44.12 | MAASMAPFKLTEGAVMLICKRESVAETFQPVVQVIDLKLVNTTQQSGNERYRLLLSDGTHYQQGMLGTQLNELVKAGKLQKGSIIQLRQYICNPVQERLIIIVVELAVIVEVCEFIGEPVPATRSVTGAFGGNPQSSVGASPSSGLVGKVNVSSASFEQPKVNQSHVPHVGSYSNTPEPGRYTASVAPPLYSNKTDPGTRFNGSSPLIGSSYGDQKMAYHNNGSDVPRPPLNAYARPQPTYQQPPPMYSNRGPVAKNEAAPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAHRGEIRVTCFNSVADQFYNQIESGKVYFISKGSLKPAQKNFNHLKNDFEIFLESTSTIQPCFEDDQSIPQQQFHFHQINEIEGMDSNSVVDLIGVVTSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSGRVSDFNGKALGTISTSQLFIEPDFPEARPLREWFEKEGKSTPSVSISREVSSVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKADSINFATESRFLIDLMEKLRAENTSTITPINPITPKKESTMHNSGFHNPGAGDVGGGQFVSPVRNSSNVGREYGTSNQGVQYGNQYNSSRPSQSTPLNLHTYCNSCGGSGHSSTNCPSIMSGPAPPVGGGMYSNRGSAPSGGTSGECFKCHQTGHWARDCPGLATAPSAYGNSGFTAR | 864 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 57235377 | 57239960 | + | Hsped.06g09600.1 | Hepe06g0960 | 572335 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe06g0960 | 864 | Gene3D | - | 513 | 705 | IPR012340 | - | |
| Hepe06g0960 | 864 | SMART | c2hcfinal6 | 832 | 848 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Hepe06g0960 | 864 | SMART | c2hcfinal6 | 788 | 804 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Hepe06g0960 | 864 | Pfam | OB-fold nucleic acid binding domain | 276 | 360 | IPR004365 | GO:0003676(InterPro) | |
| Hepe06g0960 | 864 | CDD | RPA1N | 13 | 110 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Hepe06g0960 | 864 | FunFam | Replication protein A subunit | 375 | 513 | - | - | |
| Hepe06g0960 | 864 | FunFam | Replication protein A subunit | 514 | 705 | - | - | |
| Hepe06g0960 | 864 | Gene3D | - | 8 | 123 | IPR012340 | - | |
| Hepe06g0960 | 864 | Pfam | Replication factor-A C terminal domain | 547 | 698 | IPR013955 | - | |
| Hepe06g0960 | 864 | Pfam | Zinc knuckle | 832 | 847 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Hepe06g0960 | 864 | FunFam | Replication protein A subunit | 9 | 123 | - | - | |
| Hepe06g0960 | 864 | FunFam | Replication protein A subunit | 262 | 372 | - | - | |
| Hepe06g0960 | 864 | SUPERFAMILY | Nucleic acid-binding proteins | 262 | 375 | IPR012340 | - | |
| Hepe06g0960 | 864 | Gene3D | - | 375 | 512 | IPR012340 | - | |
| Hepe06g0960 | 864 | CDD | RPA1_DBD_B | 397 | 504 | - | - | |
| Hepe06g0960 | 864 | SUPERFAMILY | Nucleic acid-binding proteins | 381 | 509 | IPR012340 | - | |
| Hepe06g0960 | 864 | SUPERFAMILY | Retrovirus zinc finger-like domains | 819 | 851 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Hepe06g0960 | 864 | Pfam | Replication factor-A protein 1, N-terminal domain | 10 | 110 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Hepe06g0960 | 864 | CDD | RPA1_DBD_C | 531 | 704 | IPR047192 | - | |
| Hepe06g0960 | 864 | SUPERFAMILY | Nucleic acid-binding proteins | 8 | 117 | IPR012340 | - | |
| Hepe06g0960 | 864 | Pfam | Replication protein A OB domain | 386 | 489 | IPR031657 | - | |
| Hepe06g0960 | 864 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 265 | 715 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
| Hepe06g0960 | 864 | MobiDBLite | consensus disorder prediction | 188 | 202 | - | - | |
| Hepe06g0960 | 864 | ProSiteProfiles | Zinc finger CCHC-type profile. | 833 | 847 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Hepe06g0960 | 864 | MobiDBLite | consensus disorder prediction | 158 | 202 | - | - | |
| Hepe06g0960 | 864 | ProSiteProfiles | Zinc finger CCHC-type profile. | 789 | 804 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Hepe06g0960 | 864 | MobiDBLite | consensus disorder prediction | 756 | 779 | - | - | |
| Hepe06g0960 | 864 | NCBIfam | replication factor-a protein 1 (rpa1) | 240 | 704 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Hepe06g0960 | 864 | SUPERFAMILY | Nucleic acid-binding proteins | 528 | 705 | IPR012340 | - | |
| Hepe06g0960 | 864 | Gene3D | - | 786 | 852 | - | - | |
| Hepe06g0960 | 864 | CDD | RPA1_DBD_A | 265 | 368 | - | - | |
| Hepe06g0960 | 864 | Gene3D | - | 262 | 371 | IPR012340 | - | |
| Hepe06g0960 | 864 | MobiDBLite | consensus disorder prediction | 158 | 181 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe06g0960 | Hepe-Chr6:57235377 | Hepe08g2687 | Hepe-Chr8:68915234 | 2.18e-244 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe06g0960 | K07466 | - | csv:101211358 | 1505.35 |