Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1020 ATGACGGATTATCGTTTATCCACGATGAATCTCTGGACGGACGAGAACGCCTCGGTGATGGATGCTTTCATGAACTCCGATCTCTCCTCTTACTGGGCTCCATCGGCTGCGTCGTCTCATTCTCTCCACAACCCACCTCCGCCACAGTCCTCCGCCTCCACCTCCACTCCGCCACCTGACCCGCCCAAGTCCCTTGCCGTCTTCAACCAGGAGACTCTGCAGCAGCGCCTCCAGGCGCTGATCGACGGCGCAAGGGAGAGTTGGACCTACGCGATTTTCTGGCAGTCGTCGTATGATTACTCCGGCGGGTCCGTTTTGGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGAAAAGCCAAAATTGTCTCGTCGGCGGCGGAACAGGCTCACCGGAAGAAGGTTCTCCGGGAGCTTAACTCTTTGATTTCTGGCTCCGCTGCCGGACTGGACGATGTGGTGGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCGATGACTCACTCGTTTGTTAATGGAGTTGGGTTGCCGAGTCAGGCGTTTTTTAATTCGACGCCGATTTGGGTCTCCGGCGGCGACCGGCTGGCGGCGTCGTCCTGTGAACGGGCCAGGCAGGGGAGGATTTTCGGGATACAGACGATGGTCTGTATTCCGACTCCTAACGGTGTCGTCGAAATGGGTTCGACGGAATTGATTCACCGAACCTCCGATTTGATGAACAAGGTCAAGATTCTTTTCAATTTCAACAATCTCGAGACGGGTTCTTGGCAATCGGGAACCACCGCCGCCGCGTCCGCGTCCGCCGCCGACGAAGGGGAAAACGACCCGTCGTCGTTGTGGATCAGTGAGCCGTCGAGTACAATCGAGATGAAGGATTCGATTGCCACCAACGTCCCTTCCGGCGGCGGCGCTCCGACGAAGCCAATCAATTCGGAAAATCCCAGTTCCAGCAGCTTAACGGAAAATCTCAGCGCGATTCAAAAACAGAACCAAAGCTTCTTGAATTTCTCCGATTACGGATTTGAATCAAATTCATCAAAAAACCCAAACGCCGCCACGACGACCACCACCACCACAGCCACCACCACGACCCCATCATTCAAGCCGGAATCCGGCGGGATGCTGAATTTCGGAAACGGGAGCCTCTTCTCCGGCCACTCACAGTACATTACAGAGGAACAGAACGAGAAAAAGAGATCCCCTGCTTCTCGGAGTAGCAACGAGGAAGGGATCCTCTCTTTCACCTCCGGCGTGATCTTACCCTCCTCCGGCAAGGTAAAATCCGGCGACTCCGACCACTCAGATCTCGAAGCTTCCGTCATCCGAGAAGTCGACAGCTGCACAAAAGCATTAGAACCCGAAAAACGACCGCGAAAACGAGGCCGAAAACCGGCGAACGGACGAGAAGAGCCATTGAATCACGTCGAAGCAGAGAGACAACGGCGAGAGAAATTGAACCAGAAATTCTACGCCCTCCGAGCTGTAGTTCCAAACGTATCGAAAATGGACAAGGCCTCGTTGCTAGGGGACGCGGTTTCATACATCAACGAGCTGAAATCGAAGCTCCAAATCGCCGAATCGGAGAAGACGGATATGGGGAAACAATTAGAATTGGTAAAGAAAGACATGGGAGGGAAAGAATCAGGGAATTACACAAACCCAATTGATCAAGATCTGAAAATTGGGAACAGAAAGGCAATGGAGATCGAAATCGAAGTCAAAATCATGGGTTGGGATGCGATGATCAGAATCCAGTCAAGTAAAAAGAATCATCCGGCGGCGAGATTGATGACGGCGTTGAAGGATTTGGATTTAGAAATGCTTCATGCGAGTGTTTCTGTAGTGAATGATCTGATGATTCAACAGGCTGCAGTGAAGATGGGGAGCAGATTTTACACACAGGAGCAGCTGAAAATCGCCCTCATTGCCCGAGTCGGTGGCGGCAGCGGCGGCCATAGAATGATGTAG 1989 52.64 MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHNPPPPQSSASTSTPPPDPPKSLAVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGGSVLGWGDGYYKGEEDKGKGKAKIVSSAAEQAHRKKVLRELNSLISGSAAGLDDVVDEEVTDTEWFFLVSMTHSFVNGVGLPSQAFFNSTPIWVSGGDRLAASSCERARQGRIFGIQTMVCIPTPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETGSWQSGTTAAASASAADEGENDPSSLWISEPSSTIEMKDSIATNVPSGGGAPTKPINSENPSSSSLTENLSAIQKQNQSFLNFSDYGFESNSSKNPNAATTTTTTTATTTTPSFKPESGGMLNFGNGSLFSGHSQYITEEQNEKKRSPASRSSNEEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKALEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIAESEKTDMGKQLELVKKDMGGKESGNYTNPIDQDLKIGNRKAMEIEIEVKIMGWDAMIRIQSSKKNHPAARLMTALKDLDLEMLHASVSVVNDLMIQQAAVKMGSRFYTQEQLKIALIARVGGGSGGHRMM 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 58162673 58164661 + Hsped.06g10200.1 Hepe06g1020 572395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1020 662 Pfam Helix-loop-helix DNA-binding domain 480 526 IPR011598 GO:0046983(InterPro)
Hepe06g1020 662 MobiDBLite consensus disorder prediction 35 49 - -
Hepe06g1020 662 MobiDBLite consensus disorder prediction 429 448 - -
Hepe06g1020 662 MobiDBLite consensus disorder prediction 454 486 - -
Hepe06g1020 662 MobiDBLite consensus disorder prediction 301 328 - -
Hepe06g1020 662 Gene3D - 475 551 IPR036638 GO:0046983(InterPro)
Hepe06g1020 662 MobiDBLite consensus disorder prediction 269 288 - -
Hepe06g1020 662 MobiDBLite consensus disorder prediction 351 387 - -
Hepe06g1020 662 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 477 543 IPR036638 GO:0046983(InterPro)
Hepe06g1020 662 PANTHER MYC 60 651 IPR045084 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Hepe06g1020 662 MobiDBLite consensus disorder prediction 351 377 - -
Hepe06g1020 662 FunFam Transcription factor bHLH13 469 543 - -
Hepe06g1020 662 CDD bHLH_AtAIB_like 473 548 - -
Hepe06g1020 662 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 476 525 IPR011598 GO:0046983(InterPro)
Hepe06g1020 662 SMART finulus 482 531 IPR011598 GO:0046983(InterPro)
Hepe06g1020 662 MobiDBLite consensus disorder prediction 398 417 - -
Hepe06g1020 662 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 73 253 IPR025610 -
Hepe06g1020 662 MobiDBLite consensus disorder prediction 35 63 - -
Hepe06g1020 662 Coils Coil 522 542 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0553 Hepe-Chr3:10741990 Hepe06g1020 Hepe-Chr6:58162673 1.18e-19 dispersed
Hepe04g1365 Hepe-Chr4:69305147 Hepe06g1020 Hepe-Chr6:58162673 8.38e-17 dispersed
Hepe05g1757 Hepe-Chr5:67888506 Hepe06g1020 Hepe-Chr6:58162673 7.07e-13 dispersed
Hepe06g1020 Hepe-Chr6:58162673 Hepe10g1639 Hepe-Chr10:53096347 9.40e-13 dispersed
Hepe05g2030 Hepe-Chr5:70826842 Hepe06g1020 Hepe-Chr6:58162673 2.08e-73 transposed
Hepe06g0933 Hepe-Chr6:56868512 Hepe06g1020 Hepe-Chr6:58162673 1.01e-48 transposed
Hepe06g1943 Hepe-Chr6:70723119 Hepe06g1020 Hepe-Chr6:58162673 6.81e-32 transposed
Hepe06g1999 Hepe-Chr6:71149137 Hepe06g1020 Hepe-Chr6:58162673 7.76e-10 transposed
Hepe06g1020 Hepe-Chr6:58162673 Hepe06g1772 Hepe-Chr6:68801441 2.18e-260 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55767 PF14215 bHLH-MYC_N 1.80E-53 CL0161 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1020 K13422 - csv:101205372 1083.94