Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1094 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAATGGGCCTCCCGATAAGCCAGTATTGTGCAATGCATGTGGATCTCGATGGAGGACGAAGGGAACTCTTGCAAACTATACCCCTCTTCATGCCCGGGCGGATCCTGATGAGTATGATGATAAAAGGATCTCTAGGTTGAAGAACTTGTCGATGTATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCAGTATCAAGATAATGGAGTTGTGGTTGGGGTTATCCCTGATCATGCTCAGAGTCAGAGTCAGAGCGTCCACAAGGCCGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCGAACTCTGAGAGCTGTGCACAATTTGGTGGTGCAGATGCAAGTGATTTGACAGGTCCCTCACAGTCAACGGCATGGGAAGCAATGGTGCCTTCTAGAAAGAGGACCTGTGTCAGTCGTCCAAAGTCTACCGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAGGATTTGCTTTTTGAGAGCGAAACTCCGATGGTTTCCGTAGAGATAGGACATGGAAGTGTTCTCATGAGGCATCCCAGTTCAATTGCTCGAGAAGAGGAGTCAGAAGCAAGCTCAATTTCAGTTGATAATAAACAGTTCTCTGTAAATGAGGCATATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTGAGAACAAGGTTATAAATTTTTCTACTCTTGGAAGTGGGAGAAAGCACTCTCATGGACAGGGGTTCTTGCAGGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAAATTGCAAGCACTTGGAAATCATAATTCACCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTATGAAGCAATTGACGAGTGAAGATCAGCGAGAATTAATGAAGTATTTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGACAGCCCTCAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCCGGGTGCGAATAAAGAAGACTGCAAGACTTTGAGTAGGCTCGTGTTGTGGGATTTGTCAAAATCAAAATGGGTGGAACGATATCATTCACTTAAGAAATGTAGTAGTGGGGAGTCTGTTCAAGGTTTTGCTGCTGCATCAAGTAGCTTCATGAATGGCAAGAGAATGCTTGATGGCCAAAACAAAAAGTTTTCAGAAACAAGGACAGCAATGAAGAGTCCCAAAAGGGTGATGACGACGAAAACAAGCGTAGAAAGCAAGGAACTCGTAGACAGCGACGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTTCACACTGGAATCTCTGCATTTTGATGAGGATAGTTCTGACCAGGATCTCCTGCTGGATGTGAGGTCAAACAATTCCTTTCCACAAGCAGAGCTCCTTCATCCATCCCTGAGTTTCGGTGCGCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGATTTATGCATCGCTGA 1635 43.73 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYDDKRISRLKNLSMYKNKEVKLLKRKQYQDNGVVVGVIPDHAQSQSQSVHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAMVPSRKRTCVSRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFESETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSVNEAYSESSILPVHYETENKVINFSTLGSGRKHSHGQGFLQEQIKRDRPQSEKLQALGNHNSPLCNIDLTDILNFREFMKQLTSEDQRELMKYLPSVDTEELPDSLNSMFDSPQFKENLNSFKQLLTEGVFDFSFPGANKEDCKTLSRLVLWDLSKSKWVERYHSLKKCSSGESVQGFAAASSSFMNGKRMLDGQNKKFSETRTAMKSPKRVMTTKTSVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSDQDLLLDVRSNNSFPQAELLHPSLSFGAQQASNSSSSVNLRFMHR 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 59449297 59456837 - Hsped.06g10940.1 Hepe06g1094 572469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1094 544 Gene3D - 294 379 IPR038108 -
Hepe06g1094 544 Gene3D - 3 85 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe06g1094 544 Pfam Asx homology domain 289 372 IPR028020 -
Hepe06g1094 544 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1094 544 PANTHER OSJNBB0038F03.10 PROTEIN 1 375 IPR044589 -
Hepe06g1094 544 FunFam GATA transcription factor 27 3 85 - -
Hepe06g1094 544 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Hepe06g1094 544 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1094 544 MobiDBLite consensus disorder prediction 96 128 - -
Hepe06g1094 544 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 300 409 IPR044867 -
Hepe06g1094 544 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1094 544 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1094 Hepe-Chr6:59449297 Hepe06g1713 Hepe-Chr6:68121264 7.32e-228 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55772 PF13919 ASXH 1.20E-08 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1094 - - - 0.0