Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1094 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAATGGGCCTCCCGATAAGCCAGTATTGTGCAATGCATGTGGATCTCGATGGAGGACGAAGGGAACTCTTGCAAACTATACCCCTCTTCATGCCCGGGCGGATCCTGATGAGTATGATGATAAAAGGATCTCTAGGTTGAAGAACTTGTCGATGTATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCAGTATCAAGATAATGGAGTTGTGGTTGGGGTTATCCCTGATCATGCTCAGAGTCAGAGTCAGAGCGTCCACAAGGCCGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCGAACTCTGAGAGCTGTGCACAATTTGGTGGTGCAGATGCAAGTGATTTGACAGGTCCCTCACAGTCAACGGCATGGGAAGCAATGGTGCCTTCTAGAAAGAGGACCTGTGTCAGTCGTCCAAAGTCTACCGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAGGATTTGCTTTTTGAGAGCGAAACTCCGATGGTTTCCGTAGAGATAGGACATGGAAGTGTTCTCATGAGGCATCCCAGTTCAATTGCTCGAGAAGAGGAGTCAGAAGCAAGCTCAATTTCAGTTGATAATAAACAGTTCTCTGTAAATGAGGCATATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTGAGAACAAGGTTATAAATTTTTCTACTCTTGGAAGTGGGAGAAAGCACTCTCATGGACAGGGGTTCTTGCAGGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAAATTGCAAGCACTTGGAAATCATAATTCACCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTATGAAGCAATTGACGAGTGAAGATCAGCGAGAATTAATGAAGTATTTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGACAGCCCTCAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCCGGGTGCGAATAAAGAAGACTGCAAGACTTTGAGTAGGCTCGTGTTGTGGGATTTGTCAAAATCAAAATGGGTGGAACGATATCATTCACTTAAGAAATGTAGTAGTGGGGAGTCTGTTCAAGGTTTTGCTGCTGCATCAAGTAGCTTCATGAATGGCAAGAGAATGCTTGATGGCCAAAACAAAAAGTTTTCAGAAACAAGGACAGCAATGAAGAGTCCCAAAAGGGTGATGACGACGAAAACAAGCGTAGAAAGCAAGGAACTCGTAGACAGCGACGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTTCACACTGGAATCTCTGCATTTTGATGAGGATAGTTCTGACCAGGATCTCCTGCTGGATGTGAGGTCAAACAATTCCTTTCCACAAGCAGAGCTCCTTCATCCATCCCTGAGTTTCGGTGCGCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGATTTATGCATCGCTGA 1635 43.73 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYDDKRISRLKNLSMYKNKEVKLLKRKQYQDNGVVVGVIPDHAQSQSQSVHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAMVPSRKRTCVSRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFESETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSVNEAYSESSILPVHYETENKVINFSTLGSGRKHSHGQGFLQEQIKRDRPQSEKLQALGNHNSPLCNIDLTDILNFREFMKQLTSEDQRELMKYLPSVDTEELPDSLNSMFDSPQFKENLNSFKQLLTEGVFDFSFPGANKEDCKTLSRLVLWDLSKSKWVERYHSLKKCSSGESVQGFAAASSSFMNGKRMLDGQNKKFSETRTAMKSPKRVMTTKTSVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSDQDLLLDVRSNNSFPQAELLHPSLSFGAQQASNSSSSVNLRFMHR 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 59449297 59456837 - Hsped.06g10940.1 Hepe06g1094 572469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1094 544 Gene3D - 294 379 IPR038108 -
Hepe06g1094 544 Gene3D - 3 85 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe06g1094 544 Pfam Asx homology domain 289 372 IPR028020 -
Hepe06g1094 544 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1094 544 PANTHER OSJNBB0038F03.10 PROTEIN 1 375 IPR044589 -
Hepe06g1094 544 FunFam GATA transcription factor 27 3 85 - -
Hepe06g1094 544 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Hepe06g1094 544 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1094 544 MobiDBLite consensus disorder prediction 96 128 - -
Hepe06g1094 544 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 300 409 IPR044867 -
Hepe06g1094 544 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1094 544 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1094 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1094 Hepe-Chr6:59449297 Hepe06g1713 Hepe-Chr6:68121264 7.32e-228 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g0381 . 83 366 C2C2-Gata Transcription Factor Family AT5G25830 53.5 3.3e-68 255.8
Hepe01g2218 . 98 332 C2C2-Gata Transcription Factor Family AT5G25830 54.8 1.2e-62 237.3
Hepe01g2218 . 98 292 C2C2-Gata Transcription Factor Family AT3G60530 51.8 2.1e-43 172.9
Hepe07g0688 . 30 294 C2C2-Gata Transcription Factor Family AT3G51080 51.8 8.3e-53 204.5
Hepe04g1570 . 99 263 C2C2-Gata Transcription Factor Family AT4G36240 52.6 1.8e-39 159.8
Hepe06g1713 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.1 1.3e-135 480.3
Hepe06g1094 . 1 520 C2C2-Gata Transcription Factor Family AT4G17570 53.0 8.4e-135 477.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55772 PF13919 ASXH 1.20E-08 No_clan Hepe TF