Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe06g1107 | ATGTACGGACTGAGTAATAGCTCTGAATCTGATTATGTTTTTCTTGAGACCATCCGGCGGCATTTGTTGGGTGATTCTGAGGCTCACCGATGTGGGAATTTCGCCGGAACCGCCGCGCCGGTTTTCTGCCGGACCTCCAGTTTCGGCAGCTTGTACCCTTGTTTGACTGAAAATTGGGGCGATTTACCCCTCAAGGAGGATGATTCCGAGGATATGCTCCTTGCCGGAGTCCTCCGCGATGCTGTCCGGGTCGGTTGGGTTCCTTCTCTTGGCTCGTCGCCATCGGAAACCTTCAATTTTGATTTCTCCGATGTCAAGCCGGAGCCGGAGATTCTCCCGCCGGTGAACCTCTTCCCGGAAGTGTTGGAGATCAAAGTGGCAACGGCGGCGCCGCCGCTGCCGGCGGTGGTTCCGGCGAAGGGAAAGCACTACCGGGGCGTTCGCCAACGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGAGACCCGGCGAAAAATGGAGCTCGGGTTTGGCTCGGGACGTTCGAGACGGCGGAGGATGCGGCGTTGGCTTACGACCGTGCCGCTTATCGGATGCGCGGCTCCAAAGCTCTTCTCAATTTCCCGCTCCGGGTCAATTCGGGTGAACCCGACCCGGTTCGAGTGACGTCGAAGCGGTCGTCGCCCCGATCCTCGCCGGAGCCTACTTCGTCGTTGTCGTCGGTGGAGAGTGGGTCCCCTAAGCGGCGGAAGAAGGCGGACGGCACAGCGGCTCAAGTGGTGGTGGGGACCAATGGAACGCAAGTGGAAGCTGACGTGGCGAAATGTACAAGTGGCGAGCAATGA | 822 | 59.49 | MYGLSNSSESDYVFLETIRRHLLGDSEAHRCGNFAGTAAPVFCRTSSFGSLYPCLTENWGDLPLKEDDSEDMLLAGVLRDAVRVGWVPSLGSSPSETFNFDFSDVKPEPEILPPVNLFPEVLEIKVATAAPPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSLSSVESGSPKRRKKADGTAAQVVVGTNGTQVEADVAKCTSGEQ | 273 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 59709222 | 59710043 | + | Hsped.06g11070.1 | Hepe06g1107 | 572482 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe06g1107 | 273 | FunFam | Ethylene-responsive transcription factor 2 | 142 | 202 | - | - | |
Hepe06g1107 | 273 | ProSiteProfiles | AP2/ERF domain profile. | 143 | 201 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1107 | 273 | PRINTS | Ethylene responsive element binding protein signature | 167 | 183 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1107 | 273 | PRINTS | Ethylene responsive element binding protein signature | 144 | 155 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1107 | 273 | Gene3D | AP2/ERF domain | 142 | 204 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1107 | 273 | PANTHER | DNA-BINDING DOMAIN | 125 | 233 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Hepe06g1107 | 273 | MobiDBLite | consensus disorder prediction | 212 | 236 | - | - | |
Hepe06g1107 | 273 | Pfam | AP2 domain | 143 | 194 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1107 | 273 | SUPERFAMILY | DNA-binding domain | 143 | 203 | IPR016177 | GO:0003677(InterPro) | |
Hepe06g1107 | 273 | SMART | rav1_2 | 143 | 207 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1107 | 273 | MobiDBLite | consensus disorder prediction | 204 | 258 | - | - | |
Hepe06g1107 | 273 | CDD | AP2 | 142 | 201 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe06g1107 | Hepe-Chr6:59709222 | Hepe07g0285 | Hepe-Chr7:2896901 | 1.83e-45 | dispersed | |
Hepe06g1107 | Hepe-Chr6:59709222 | Hepe06g1108 | Hepe-Chr6:59725733 | 1.98e-29 | tandem | |
Hepe03g0358 | Hepe-Chr3:5131763 | Hepe06g1107 | Hepe-Chr6:59709222 | 3.66e-18 | wgd | |
Hepe06g1107 | Hepe-Chr6:59709222 | Hepe06g1703 | Hepe-Chr6:68020225 | 5.54e-102 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55773 | PF00847 | AP2 | 1.10E-14 | CL0081 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe06g1107 | K09286 | - | csv:101203663 | 399.438 |