Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1107 ATGTACGGACTGAGTAATAGCTCTGAATCTGATTATGTTTTTCTTGAGACCATCCGGCGGCATTTGTTGGGTGATTCTGAGGCTCACCGATGTGGGAATTTCGCCGGAACCGCCGCGCCGGTTTTCTGCCGGACCTCCAGTTTCGGCAGCTTGTACCCTTGTTTGACTGAAAATTGGGGCGATTTACCCCTCAAGGAGGATGATTCCGAGGATATGCTCCTTGCCGGAGTCCTCCGCGATGCTGTCCGGGTCGGTTGGGTTCCTTCTCTTGGCTCGTCGCCATCGGAAACCTTCAATTTTGATTTCTCCGATGTCAAGCCGGAGCCGGAGATTCTCCCGCCGGTGAACCTCTTCCCGGAAGTGTTGGAGATCAAAGTGGCAACGGCGGCGCCGCCGCTGCCGGCGGTGGTTCCGGCGAAGGGAAAGCACTACCGGGGCGTTCGCCAACGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGAGACCCGGCGAAAAATGGAGCTCGGGTTTGGCTCGGGACGTTCGAGACGGCGGAGGATGCGGCGTTGGCTTACGACCGTGCCGCTTATCGGATGCGCGGCTCCAAAGCTCTTCTCAATTTCCCGCTCCGGGTCAATTCGGGTGAACCCGACCCGGTTCGAGTGACGTCGAAGCGGTCGTCGCCCCGATCCTCGCCGGAGCCTACTTCGTCGTTGTCGTCGGTGGAGAGTGGGTCCCCTAAGCGGCGGAAGAAGGCGGACGGCACAGCGGCTCAAGTGGTGGTGGGGACCAATGGAACGCAAGTGGAAGCTGACGTGGCGAAATGTACAAGTGGCGAGCAATGA 822 59.49 MYGLSNSSESDYVFLETIRRHLLGDSEAHRCGNFAGTAAPVFCRTSSFGSLYPCLTENWGDLPLKEDDSEDMLLAGVLRDAVRVGWVPSLGSSPSETFNFDFSDVKPEPEILPPVNLFPEVLEIKVATAAPPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSLSSVESGSPKRRKKADGTAAQVVVGTNGTQVEADVAKCTSGEQ 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 59709222 59710043 + Hsped.06g11070.1 Hepe06g1107 572482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1107 273 FunFam Ethylene-responsive transcription factor 2 142 202 - -
Hepe06g1107 273 ProSiteProfiles AP2/ERF domain profile. 143 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1107 273 PRINTS Ethylene responsive element binding protein signature 167 183 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1107 273 PRINTS Ethylene responsive element binding protein signature 144 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1107 273 Gene3D AP2/ERF domain 142 204 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1107 273 PANTHER DNA-BINDING DOMAIN 125 233 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Hepe06g1107 273 MobiDBLite consensus disorder prediction 212 236 - -
Hepe06g1107 273 Pfam AP2 domain 143 194 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1107 273 SUPERFAMILY DNA-binding domain 143 203 IPR016177 GO:0003677(InterPro)
Hepe06g1107 273 SMART rav1_2 143 207 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1107 273 MobiDBLite consensus disorder prediction 204 258 - -
Hepe06g1107 273 CDD AP2 142 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1107 Hepe-Chr6:59709222 Hepe07g0285 Hepe-Chr7:2896901 1.83e-45 dispersed
Hepe06g1107 Hepe-Chr6:59709222 Hepe06g1108 Hepe-Chr6:59725733 1.98e-29 tandem
Hepe03g0358 Hepe-Chr3:5131763 Hepe06g1107 Hepe-Chr6:59709222 3.66e-18 wgd
Hepe06g1107 Hepe-Chr6:59709222 Hepe06g1703 Hepe-Chr6:68020225 5.54e-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55773 PF00847 AP2 1.10E-14 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1107 K09286 - csv:101203663 399.438