Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1115 ATGATGGCTGCTAAAGATGATCATCTTGGATTGAGCCTTGGATTGACCTTTGATTCTCATCATCATCATCATCATTTGCAACTCAATCTCATGCCGTCTTGGAATAATGACGCTTCCTCAGATCGGACATCGGAAACCGGGCGATCGTTGCTCCGAGGTATCGATGTGAACCGGATGCCGCCGTCGTCGGCGGCGGATTGCGACGAGGAGGAGGAAGAGGAGGCGGCGATGTCCAGCCCTAACAGTACGGTTTCGAGTATCAGTGGGAAGAGAAGCGAACGAGAAGCCAACGGTGAGGATCTCGATTGTTCTAGAGGAATCAGTGATGAAGAAGACGGCGAAACTTCGAGAAAAAAGCTTCGCCTCACTAAAGATCAGTCCGCCGTCTTGGAAGAGAGCTTCAAAGAACACAACACTCTCAATCCTAAGCAAAAATTGGCGTTGGCTAAACAGTTAGGTCTCCGGCCGAGACAAGTCGAAGTCTGGTTCCAAAACAGAAGGGCAAGAACAAAATTGAAGCAAACAGAAGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAGAATCTGACGGATGAAAACAGGCGGTTGCAAAAAGAAGTACAGGAACTGAGAGCACTGAAACTTTCCCCTCAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCATCATGTGAGCGCGTGGGGGTCCCACCTTCCACGTCAGCCCCCACTAGAATGGGCCAGGCACAAGCCCAGGCCCACCATCACTCTCGGCCCATCCACATCAACCCCTGGGCCTCCGCCATCCCGGCCCGGCCCTTCAACAACGCCCTACACCCTCGCTCGTAA 840 52.38 MMAAKDDHLGLSLGLTFDSHHHHHHLQLNLMPSWNNDASSDRTSETGRSLLRGIDVNRMPPSSAADCDEEEEEEAAMSSPNSTVSSISGKRSEREANGEDLDCSRGISDEEDGETSRKKLRLTKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVGVPPSTSAPTRMGQAQAQAHHHSRPIHINPWASAIPARPFNNALHPRS 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 59825483 59827514 - Hsped.06g11150.1 Hepe06g1115 572490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1115 279 CDD homeodomain 117 174 IPR001356 GO:0003677(InterPro)
Hepe06g1115 279 Gene3D - 123 169 - -
Hepe06g1115 279 SMART halz 173 216 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1115 279 SUPERFAMILY Homeodomain-like 108 174 IPR009057 -
Hepe06g1115 279 FunFam Homeobox-leucine zipper protein 18 104 178 - -
Hepe06g1115 279 Pfam HD-ZIP protein N terminus 2 95 IPR006712 GO:0005634(InterPro)
Hepe06g1115 279 Coils Coil 172 209 - -
Hepe06g1115 279 MobiDBLite consensus disorder prediction 92 120 - -
Hepe06g1115 279 MobiDBLite consensus disorder prediction 37 120 - -
Hepe06g1115 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 2 252 IPR050762 -
Hepe06g1115 279 MobiDBLite consensus disorder prediction 77 91 - -
Hepe06g1115 279 Pfam Homeobox associated leucine zipper 173 207 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe06g1115 279 PRINTS Lambda-repressor HTH signature 144 153 IPR000047 GO:0003677(InterPro)
Hepe06g1115 279 PRINTS Lambda-repressor HTH signature 153 169 IPR000047 GO:0003677(InterPro)
Hepe06g1115 279 SMART HOX_1 115 177 IPR001356 GO:0003677(InterPro)
Hepe06g1115 279 Pfam Homeodomain 117 171 IPR001356 GO:0003677(InterPro)
Hepe06g1115 279 ProSitePatterns 'Homeobox' domain signature. 148 171 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe06g1115 279 ProSiteProfiles 'Homeobox' domain profile. 113 173 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g2068 Hepe-Chr5:71174832 Hepe06g1115 Hepe-Chr6:59825483 3.47e-81 dispersed
Hepe06g1115 Hepe-Chr6:59825483 Hepe07g0591 Hepe-Chr7:6437643 1.29e-59 dispersed
Hepe06g1115 Hepe-Chr6:59825483 Hepe05g0516 Hepe-Chr5:7049597 1.20e-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55775 PF04618 HD-ZIP_N 4.70E-22 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1115 K09338 - csv:101223208 426.787