Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1118 ATGGAAGATCCTCTCCACATCTTCCAATTTCACTCTCAATCATCATCTTCTTCGTCGTCGTCTTCTTCTTCTTCAGATACCAAAATTTGCATCAAAGAAAAGAATTCCAAAAAGGTCAAACTACTCCGAAACGACGGCAAACATCCCACATATCGCGGCGTCCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAGCCCAAGAAGAAATCAAGAATTTGGTTGGGCACATTTTCCACGCCGGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACTATCAAAGGCCATTCCGCTTACCTCAACTTCCCCGAATTGGCTCACCGCCTCCCCCGTCCGGCTACCTCCTCGCCCAAGGACATTCGAGCCGCCGCCGCCCAAGCCGCCTCGTTTACCAACAATCCCCTCCATCCGACTGACCACCACTACCACGCCGCCGCTCAATCGGACATCAATCGCTCTCCTTCTTCTTCCTCCTCCTCCGTCGCCGCTAAGAAATCTTGCGGCGAAATCGACGATCCTTTCTTCGATCTTCCCGATCTCTTCCTCAATCCGAATCACCAAATCGATACATTCTGTTTCTCTCAAATTCTCCCCATCGACGGTTTCGACTCTGTTTTTGGCCGCCCGCCGTCGCCGTCGCCGTCGTCCGAATATTACGCCTACAGAGATAGCCTACTCTAG 693 52.24 MEDPLHIFQFHSQSSSSSSSSSSSSDTKICIKEKNSKKVKLLRNDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPATSSPKDIRAAAAQAASFTNNPLHPTDHHYHAAAQSDINRSPSSSSSSVAAKKSCGEIDDPFFDLPDLFLNPNHQIDTFCFSQILPIDGFDSVFGRPPSPSPSSEYYAYRDSLL 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 59915307 59915999 + Hsped.06g11180.1 Hepe06g1118 572493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1118 230 CDD AP2 51 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1118 230 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1118 230 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1118 230 Pfam AP2 domain 50 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1118 230 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Hepe06g1118 230 SMART rav1_2 50 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1118 230 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677(InterPro)
Hepe06g1118 230 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 191 IPR051032 -
Hepe06g1118 230 MobiDBLite consensus disorder prediction 1 30 - -
Hepe06g1118 230 MobiDBLite consensus disorder prediction 8 29 - -
Hepe06g1118 230 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe06g1118 230 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g2073 Hepe-Chr5:71232350 Hepe06g1118 Hepe-Chr6:59915307 1.52e-37 dispersed
Hepe06g0322 Hepe-Chr6:11447789 Hepe06g1118 Hepe-Chr6:59915307 2.57e-30 dispersed
Hepe06g1118 Hepe-Chr6:59915307 Hepe10g0364 Hepe-Chr10:3964166 8.77e-42 dispersed
Hepe06g1118 Hepe-Chr6:59915307 Hepe08g2612 Hepe-Chr8:68003145 9.50e-44 transposed
Hepe06g1118 Hepe-Chr6:59915307 Hepe09g0797 Hepe-Chr9:7758930 5.60e-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55777 PF00847 AP2 5.20E-13 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1118 - - - 0.0