Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe06g1118 | ATGGAAGATCCTCTCCACATCTTCCAATTTCACTCTCAATCATCATCTTCTTCGTCGTCGTCTTCTTCTTCTTCAGATACCAAAATTTGCATCAAAGAAAAGAATTCCAAAAAGGTCAAACTACTCCGAAACGACGGCAAACATCCCACATATCGCGGCGTCCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATCAGAGAGCCCAAGAAGAAATCAAGAATTTGGTTGGGCACATTTTCCACGCCGGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACTATCAAAGGCCATTCCGCTTACCTCAACTTCCCCGAATTGGCTCACCGCCTCCCCCGTCCGGCTACCTCCTCGCCCAAGGACATTCGAGCCGCCGCCGCCCAAGCCGCCTCGTTTACCAACAATCCCCTCCATCCGACTGACCACCACTACCACGCCGCCGCTCAATCGGACATCAATCGCTCTCCTTCTTCTTCCTCCTCCTCCGTCGCCGCTAAGAAATCTTGCGGCGAAATCGACGATCCTTTCTTCGATCTTCCCGATCTCTTCCTCAATCCGAATCACCAAATCGATACATTCTGTTTCTCTCAAATTCTCCCCATCGACGGTTTCGACTCTGTTTTTGGCCGCCCGCCGTCGCCGTCGCCGTCGTCCGAATATTACGCCTACAGAGATAGCCTACTCTAG | 693 | 52.24 | MEDPLHIFQFHSQSSSSSSSSSSSSDTKICIKEKNSKKVKLLRNDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRLPRPATSSPKDIRAAAAQAASFTNNPLHPTDHHYHAAAQSDINRSPSSSSSSVAAKKSCGEIDDPFFDLPDLFLNPNHQIDTFCFSQILPIDGFDSVFGRPPSPSPSSEYYAYRDSLL | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 59915307 | 59915999 | + | Hsped.06g11180.1 | Hepe06g1118 | 572493 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe06g1118 | 230 | CDD | AP2 | 51 | 109 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1118 | 230 | PRINTS | Ethylene responsive element binding protein signature | 51 | 62 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1118 | 230 | PRINTS | Ethylene responsive element binding protein signature | 73 | 89 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1118 | 230 | Pfam | AP2 domain | 50 | 100 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1118 | 230 | FunFam | Ethylene-responsive transcription factor 2 | 49 | 108 | - | - | |
Hepe06g1118 | 230 | SMART | rav1_2 | 50 | 113 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1118 | 230 | SUPERFAMILY | DNA-binding domain | 50 | 108 | IPR016177 | GO:0003677(InterPro) | |
Hepe06g1118 | 230 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 21 | 191 | IPR051032 | - | |
Hepe06g1118 | 230 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Hepe06g1118 | 230 | MobiDBLite | consensus disorder prediction | 8 | 29 | - | - | |
Hepe06g1118 | 230 | ProSiteProfiles | AP2/ERF domain profile. | 50 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe06g1118 | 230 | Gene3D | AP2/ERF domain | 50 | 108 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe05g2073 | Hepe-Chr5:71232350 | Hepe06g1118 | Hepe-Chr6:59915307 | 1.52e-37 | dispersed | |
Hepe06g0322 | Hepe-Chr6:11447789 | Hepe06g1118 | Hepe-Chr6:59915307 | 2.57e-30 | dispersed | |
Hepe06g1118 | Hepe-Chr6:59915307 | Hepe10g0364 | Hepe-Chr10:3964166 | 8.77e-42 | dispersed | |
Hepe06g1118 | Hepe-Chr6:59915307 | Hepe08g2612 | Hepe-Chr8:68003145 | 9.50e-44 | transposed | |
Hepe06g1118 | Hepe-Chr6:59915307 | Hepe09g0797 | Hepe-Chr9:7758930 | 5.60e-44 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55777 | PF00847 | AP2 | 5.20E-13 | CL0081 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe06g1118 | - | - | - | 0.0 |