Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1154 ATGTCATCTTCTTCCCTTCCCACCACCTTCTCTCAACTTCCTCCTCCTCCTTCTCCTCCTCCTCCTTCCGACCATCTCTGCTATGTTCATTGCAACATTTGCGACACCGTTTTGGCGGTGAGTGTTCCTTCCGCTAGTTTGTTCAAAACGGTCACCGTCCGTTGCGGTCACTGCGCCAATCTTCTACCGGTGAACATGCGCGGTGGCATGCTTCTCCCTTCTGCAAATCAATTTCACGGTTTTCCTCACTCGACCGCTTTTTTCTCTCCCAATACTCACAATTTTCTGGAAGAGATCTCAAATCCAAATCCAAATTTTCTGATCAACCAAACAGATGGAATTGATTTGACCATGGCAACTCGTGTAGCCAACGATCTTCCAAGGCAACCCCCAAGCATAAATAGACCTCCAGAAAAGAGACAGAGAGTACCCTCTGCTTACAACCGATTCATCAAGGAGGAGATCCAACGCATTAAAGCTGCCAATCCAGACATCTCTCACAGAGAAGCATTCAGTGCTGCTGCTAAGAATTGGGCCCACTTCCCTCACATTCATTTTGGTCTTCTTCCTGACCACACTGCCAAAAAGACAAACATGCTTGAGCAGGAAGGAGAAGATGTTATGTTGAAAGATGGTCGGTTTTTCGGTTCAGCTAACATGGGAGTTTCTCCTTATTAA 678 46.61 MSSSSLPTTFSQLPPPPSPPPPSDHLCYVHCNICDTVLAVSVPSASLFKTVTVRCGHCANLLPVNMRGGMLLPSANQFHGFPHSTAFFSPNTHNFLEEISNPNPNFLINQTDGIDLTMATRVANDLPRQPPSINRPPEKRQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHFGLLPDHTAKKTNMLEQEGEDVMLKDGRFFGSANMGVSPY 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 60868855 60875603 - Hsped.06g11540.1 Hepe06g1154 572529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1154 225 PANTHER PROTEIN YABBY 6-RELATED 22 197 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Hepe06g1154 225 Gene3D High mobility group box domain 133 197 IPR036910 -
Hepe06g1154 225 FunFam Axial regulator YABBY 133 205 - -
Hepe06g1154 225 SUPERFAMILY HMG-box 128 181 IPR036910 -
Hepe06g1154 225 CDD HMG-box_SF 142 178 - -
Hepe06g1154 225 Pfam YABBY protein 22 188 IPR006780 GO:0007275(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1154 Hepe-Chr6:60868855 Hepe08g0186 Hepe-Chr8:1664329 8.30e-51 dispersed
Hepe10g1805 Hepe-Chr10:54818050 Hepe06g1154 Hepe-Chr6:60868855 1.84e-18 transposed
Hepe06g1154 Hepe-Chr6:60868855 Hepe06g1651 Hepe-Chr6:67400673 1.05e-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55780 PF04690 YABBY 2.40E-70 CL0114 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1154 K25796 - csv:101219601 326.25