Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1154 ATGTCATCTTCTTCCCTTCCCACCACCTTCTCTCAACTTCCTCCTCCTCCTTCTCCTCCTCCTCCTTCCGACCATCTCTGCTATGTTCATTGCAACATTTGCGACACCGTTTTGGCGGTGAGTGTTCCTTCCGCTAGTTTGTTCAAAACGGTCACCGTCCGTTGCGGTCACTGCGCCAATCTTCTACCGGTGAACATGCGCGGTGGCATGCTTCTCCCTTCTGCAAATCAATTTCACGGTTTTCCTCACTCGACCGCTTTTTTCTCTCCCAATACTCACAATTTTCTGGAAGAGATCTCAAATCCAAATCCAAATTTTCTGATCAACCAAACAGATGGAATTGATTTGACCATGGCAACTCGTGTAGCCAACGATCTTCCAAGGCAACCCCCAAGCATAAATAGACCTCCAGAAAAGAGACAGAGAGTACCCTCTGCTTACAACCGATTCATCAAGGAGGAGATCCAACGCATTAAAGCTGCCAATCCAGACATCTCTCACAGAGAAGCATTCAGTGCTGCTGCTAAGAATTGGGCCCACTTCCCTCACATTCATTTTGGTCTTCTTCCTGACCACACTGCCAAAAAGACAAACATGCTTGAGCAGGAAGGAGAAGATGTTATGTTGAAAGATGGTCGGTTTTTCGGTTCAGCTAACATGGGAGTTTCTCCTTATTAA 678 46.61 MSSSSLPTTFSQLPPPPSPPPPSDHLCYVHCNICDTVLAVSVPSASLFKTVTVRCGHCANLLPVNMRGGMLLPSANQFHGFPHSTAFFSPNTHNFLEEISNPNPNFLINQTDGIDLTMATRVANDLPRQPPSINRPPEKRQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHFGLLPDHTAKKTNMLEQEGEDVMLKDGRFFGSANMGVSPY 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 60868855 60875603 - Hsped.06g11540.1 Hepe06g1154 572529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1154 225 PANTHER PROTEIN YABBY 6-RELATED 22 197 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Hepe06g1154 225 Gene3D High mobility group box domain 133 197 IPR036910 -
Hepe06g1154 225 FunFam Axial regulator YABBY 133 205 - -
Hepe06g1154 225 SUPERFAMILY HMG-box 128 181 IPR036910 -
Hepe06g1154 225 CDD HMG-box_SF 142 178 - -
Hepe06g1154 225 Pfam YABBY protein 22 188 IPR006780 GO:0007275(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1154 K25796 - - csv:101219601 326.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1154 Hepe-Chr6:60868855 Hepe08g0186 Hepe-Chr8:1664329 8.30e-51 dispersed
Hepe10g1805 Hepe-Chr10:54818050 Hepe06g1154 Hepe-Chr6:60868855 1.84e-18 transposed
Hepe06g1154 Hepe-Chr6:60868855 Hepe06g1651 Hepe-Chr6:67400673 1.05e-97 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g1651 . 78 235 C2C2-YABBY Transcription Factor Family AT2G45190 60.5 1.3e-44 176.4
Hepe06g1154 . 71 225 C2C2-YABBY Transcription Factor Family AT2G45190 55.5 5.6e-40 161.0
Hepe08g0186 . 1 171 C2C2-YABBY Transcription Factor Family AT1G08465 64.4 1.5e-54 209.5
Hepe06g1651 . 34 225 C2C2-YABBY Transcription Factor Family AT1G08465 53.9 3.2e-44 175.3
Hepe06g1154 . 23 202 C2C2-YABBY Transcription Factor Family AT1G08465 54.4 1.7e-42 169.5
Hepe09g0669 . 5 182 C2C2-YABBY Transcription Factor Family AT1G08465 53.3 5.1e-42 167.9
Hepe06g1651 . 45 234 C2C2-YABBY Transcription Factor Family AT4G00180 55.3 1.8e-51 199.5
Hepe06g1154 . 33 223 C2C2-YABBY Transcription Factor Family AT4G00180 55.3 4.6e-47 184.9
Hepe10g1628 . 1 176 C2C2-YABBY Transcription Factor Family AT1G23420 50.3 2.0e-39 159.8
Hepe08g2532 . 10 170 C2C2-YABBY Transcription Factor Family AT2G26580 74.5 4.7e-63 237.7
Hepe09g0669 . 7 177 C2C2-YABBY Transcription Factor Family AT2G26580 70.8 6.1e-63 237.3
Hepe08g0186 . 1 172 C2C2-YABBY Transcription Factor Family AT2G26580 57.6 1.0e-46 183.3
Hepe06g1651 . 34 198 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 3.7e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55780 PF04690 YABBY 2.40E-70 CL0114 Hepe TF