Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1177 ATGGAGGGACGAGCTGGGGTTGCCGGAAATGGGGTTACGCCGGCGGCCGGATCAGATCCTCCGAGGACCGCTACGGCTACTCCGGCATCGGAAGGGGGTGGTCCGGTGGGTCCTGCGGAGTCCGGGAAGAAGAAGAGGGGGAGGCCGAGGAAGTATGGCCCGGACGGGAAGTTGAATGTGGCGGCGGCGCTGTCACCGAAGCCCATATCGGCGTCCGCACCGGCACCGGCGGCGGTGATTGATTTCTCCGCGGAGAAACGTGGGAAAGTGCGGCCGGCGAGTTCCTTGAGCAAAACCAAATATGAAGGGGAGAATTTAGGTGAATGGGTACCTTGTTCTGTTGGTGCTAATTTCACAGCCCATATCATCACTGTCAACATTGGTGAGGACGTTACGATGAAGGTTCTCTCGTTTTCTCAACAAGGGCCTCGAGCCATTTGCATTCTCTCCGCCAACGGCGTGATTTCGAGCGTCACACTTCGTCAACCCGATTCCTCTGGAGGAACATTAACATATGAGGGTCGGTTTGAGATATTGTCGTTGTCGGGATCGTTCATGCCGAGCGACAGCGCAGGAACGAAGAGCAGAACCGGTGGAATGAGTGTCTCCTTATCGAGTCCAGATGGGCGTGTTGTTGGTGGCGGAGTTGCTGGTTTGTTAATAGCTGCCAGTCCTGTTCAAGTGGTAGTTGGAAGCTTTATATCTGGGAACCAACACGAACAAAAGCCAAAGAAGCCGAAACAGGACGTCGTATTACCGGTTTCTGCTCTTCCGATCTCCGGTGGTGAACCGAAGTCATACACGACGACGACGTCGTTTCGTGCTGAAACTTGGTCACCTTTGGTACCAGATTTGAGAAGTCAGCCAACTGATATCAATGTATCTTTAACCAGTGGTTAA 900 53.89 MEGRAGVAGNGVTPAAGSDPPRTATATPASEGGGPVGPAESGKKKRGRPRKYGPDGKLNVAAALSPKPISASAPAPAAVIDFSAEKRGKVRPASSLSKTKYEGENLGEWVPCSVGANFTAHIITVNIGEDVTMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSAGTKSRTGGMSVSLSSPDGRVVGGGVAGLLIAASPVQVVVGSFISGNQHEQKPKKPKQDVVLPVSALPISGGEPKSYTTTTSFRAETWSPLVPDLRSQPTDINVSLTSG 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 61204959 61207929 - Hsped.06g11770.1 Hepe06g1177 572552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1177 299 ProSiteProfiles PPC domain profile profile. 115 260 IPR005175 -
Hepe06g1177 299 CDD DUF296 121 233 IPR005175 -
Hepe06g1177 299 FunFam AT-hook motif nuclear-localized protein 1-like 120 250 - -
Hepe06g1177 299 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 20 255 IPR039605 GO:0003680(InterPro)
Hepe06g1177 299 MobiDBLite consensus disorder prediction 1 59 - -
Hepe06g1177 299 Pfam Plants and Prokaryotes Conserved (PCC) domain 120 233 IPR005175 -
Hepe06g1177 299 SUPERFAMILY AF0104/ALDC/Ptd012-like 117 238 - -
Hepe06g1177 299 Gene3D - 119 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1177 Hepe-Chr6:61204959 Hepe07g0228 Hepe-Chr7:2171780 1.05e-81 dispersed
Hepe06g1177 Hepe-Chr6:61204959 Hepe06g1625 Hepe-Chr6:67129009 1.66e-133 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1177 - - - 0.0