Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1185 ATGAGAAGGGTTCATTGGATTTCTCTTTCTCATGCTCTTCTGTTCTTGATTCCATTTCTCGTCTGTGTTTCCTCCGCCGTCACTGAGAAGGACATTTTGCTTCAATTCAAAGATGCTGTTACAGAGGATCCGTTTGATTTCTTGAGAACTTGGGTCGCCAGCGAGGATCACTGCCGGAATTTCAGCGGCGTGTTCTGTAATTCCGATGGGTTTGTGGAGAAGATTGTTCTATGGAACTCCAGCTTGGCTGGAACTTTGTCGCCTTCCTTATCGAGATTGAAGTTTTTGAGGTCTTTGACATTGTATGGAAATAGATTTACTGGTAATATTCCAATTGAATATGGCACCATTGCTACACTGTGGAAGCTGAACTTGAGCTCCAATGCTTTGTCGGGTTCCGTCCCGGAGTTCATCGGCGATTTGCCGAGCATTCGGTTTCTGGATTTGTCTAGAAATGGCTTCACTGGGGAGATTCCTTCAGCTGTGTTCAAGAATTGTTTCAAAACTAGATTTGTTTCATTTTCTCATAACAGATTTTCAGGTATGATACCTTCAACAATTTTGCACTGTTTGAGTCTTGAAGGCTTTGATTTATCAAACAATGATCTAAGTGGGAGCATTCCTTTGCAACTTTGTAACATTCAAAGATTAGAGTATGTTTCTGTGAGAAGCAATGCACTTTCTGGGAGTGTCCAAGGGCAATTCTCTGCTTGCCAGAGCTTGAAACTTGTGGATCTGAGTAGCAATTTGTTTACTGGCTCGCCGCCGTTCGAGGTTCTCGGATTCGAAAACATCACTTATTTTAATGTCTCATATAACAAGTTTAGTGGAGGAATTGCAGAGGTTGTGGGTTGTAGTGATAAACTGGAAGTTCTTGATGTTTCAGGGAATGGTTTGGATGGGGAGATCCCATTGAGCATTACAAAATGTGGGAGTCTAAAAATTTTGGATTTGGAATCTAACAAGCTGGTTGGGAAGATCCCTGCTGAACTTGCAGATTTGAAAAAGCTTTTGGTGATTCGGTTGGGTTATAATTTGATCACCGGAACGGTTCCAGCCGTTTTCGGGAACATCGAGTTACTTCAGGTTTTGAATTTGCACAGTCTCAAACTTGTTGGTGAGATTCCTGATGATATAACCAGTTGCAGGTTTCTTCTTGAGCTGGATGTTTCTGGTAATGCATTGGAAGGGGGAATTCCTCAATCTCTTTACAACATGACATACCTTGAAATTCTTGATCTACACGATAACCGTCTGAACGGAAGCATTCCGTCGACGCTTGGGAGCCTCTCGAAACTACAGTTTCTTGATCTATCTCGAAACCTGCTGTCTGGTTCGATACCACCTACTCTTGAAAATCTCACATTGCTGCACCATTTCAATGTCTCTTTCAATAACCTTTCGGGCGCTATACCTCCCGTGAATACGATCCGAGATTTCGGGCCTTCTGCGTTCTCAAACAATCCTTTGCTTTGTGGTGCTCCCTTGGATTCTTGCTCTGCAGGTAGTGCCACTGGCACGACTTCCACATCGAAGAAGCCAAAGGTTCTTAGTCTATCTGCAATCATTGCAATCGTAGCAGCGGTTGTGATCCTTATCGGGGTTTGCGTGATCTCCATTTTGAACCTAATGGCTCGGACAAGGAAGGCAAGGAGCACCGAAATCATTGAGAGCACACCACTCGGTTCAACCGATTCAGGCATCATAATTGGGAAACTGGTTCTTTTCAGCAAAACTTTGCCATCAAAGTATGAAGACTGGGAGGCTGGCACCAAAGCTTTGCTCGACAAGGAATGTCTAATAGGGGGTGGCTCAATCGGCACCGTCTACAAGACAAGTTTCGAGGGCGGAATCTCCATCGCTGTGAAGAAGCTCGAGACTCTAGGGAGGATCAGAAGCCAAGACGAGTTTGAGACTGAAATCGGACGTTTGGGAAACATTAAACACCCGAACTTAGTCGCTTTTCAGGGGTACTATTGGTCCTCATCAATGCAGTTGATTCTATCTGAATTCGTCGTAAACGGAAATTTGTACGACAATCTACACGGTCTGAGTTATCCAGGCACCAGCACAGGCATTGGCAATACAGAGTTGCATTGGTCTAGGAGATATCAAATTGCAGTTGGAACAGCTAGAGCTCTTGCTTATCTTCACCATGATTGTAGGCCTCCAATTGTTCACCTCAACATAAAATCTACTAACATACTGCTAGACGAAAACTACGAAGCCAAGTTATCCGATTACGGATTGGGGAAGTTGCTTCCCGTTTTGGACAATTACATCTTAACCAAATACCATACCGCTGTAGGCTACGTCGCACCGGAGTTGGCACAAAGTTTGAGAGTTAGTGAAAAATGCGACGTGTATAGTTTCGGAGTGATTCTATTGGAGTTGGTAACAGGAAGGAAACCAGTTGAGAGTCCAAGAGCAAACCAGGTAGTGATTTTGTGTGAATATGTAAGGGAGTTGTTGGAAAGTGGTTCTGCTTCTGACTGTTTCGATCGAAACTTACGTGGCATTGCCGAAAACGAGCTCATCCAAGTGATGAAGTTGGGATTGATTTGTACATCTGAGATCCCTTCGAAGAGACCAAGCATGGCCGAGGTTGTTCAAGTTCTCGAGTCGATAAGAAACGGATTAGGATCGTAG 2649 43.98 MRRVHWISLSHALLFLIPFLVCVSSAVTEKDILLQFKDAVTEDPFDFLRTWVASEDHCRNFSGVFCNSDGFVEKIVLWNSSLAGTLSPSLSRLKFLRSLTLYGNRFTGNIPIEYGTIATLWKLNLSSNALSGSVPEFIGDLPSIRFLDLSRNGFTGEIPSAVFKNCFKTRFVSFSHNRFSGMIPSTILHCLSLEGFDLSNNDLSGSIPLQLCNIQRLEYVSVRSNALSGSVQGQFSACQSLKLVDLSSNLFTGSPPFEVLGFENITYFNVSYNKFSGGIAEVVGCSDKLEVLDVSGNGLDGEIPLSITKCGSLKILDLESNKLVGKIPAELADLKKLLVIRLGYNLITGTVPAVFGNIELLQVLNLHSLKLVGEIPDDITSCRFLLELDVSGNALEGGIPQSLYNMTYLEILDLHDNRLNGSIPSTLGSLSKLQFLDLSRNLLSGSIPPTLENLTLLHHFNVSFNNLSGAIPPVNTIRDFGPSAFSNNPLLCGAPLDSCSAGSATGTTSTSKKPKVLSLSAIIAIVAAVVILIGVCVISILNLMARTRKARSTEIIESTPLGSTDSGIIIGKLVLFSKTLPSKYEDWEAGTKALLDKECLIGGGSIGTVYKTSFEGGISIAVKKLETLGRIRSQDEFETEIGRLGNIKHPNLVAFQGYYWSSSMQLILSEFVVNGNLYDNLHGLSYPGTSTGIGNTELHWSRRYQIAVGTARALAYLHHDCRPPIVHLNIKSTNILLDENYEAKLSDYGLGKLLPVLDNYILTKYHTAVGYVAPELAQSLRVSEKCDVYSFGVILLELVTGRKPVESPRANQVVILCEYVRELLESGSASDCFDRNLRGIAENELIQVMKLGLICTSEIPSKRPSMAEVVQVLESIRNGLGS 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 61349035 61352532 + Hsped.06g11850.1 Hepe06g1185 572560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1185 882 CDD STKc_IRAK 601 876 - -
Hepe06g1185 882 Gene3D Ribonuclease Inhibitor 383 500 IPR032675 -
Hepe06g1185 882 SMART LRR_typ_2 141 165 IPR003591 -
Hepe06g1185 882 SMART LRR_typ_2 430 454 IPR003591 -
Hepe06g1185 882 SMART LRR_typ_2 406 429 IPR003591 -
Hepe06g1185 882 SMART LRR_typ_2 334 357 IPR003591 -
Hepe06g1185 882 SUPERFAMILY L domain-like 259 496 - -
Hepe06g1185 882 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 26 163 - -
Hepe06g1185 882 ProSiteProfiles Protein kinase domain profile. 595 876 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe06g1185 882 Gene3D Ribonuclease Inhibitor 26 185 IPR032675 -
Hepe06g1185 882 Gene3D Ribonuclease Inhibitor 186 281 IPR032675 -
Hepe06g1185 882 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 256 503 - -
Hepe06g1185 882 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 164 255 - -
Hepe06g1185 882 SUPERFAMILY Protein kinase-like (PK-like) 596 874 IPR011009 -
Hepe06g1185 882 Gene3D Ribonuclease Inhibitor 282 379 IPR032675 -
Hepe06g1185 882 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Hepe06g1185 882 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 672 882 - -
Hepe06g1185 882 Pfam Leucine Rich Repeat 120 141 IPR001611 GO:0005515(InterPro)
Hepe06g1185 882 Pfam Leucine Rich Repeat 192 213 IPR001611 GO:0005515(InterPro)
Hepe06g1185 882 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515(InterPro)
Hepe06g1185 882 Pfam Leucine Rich Repeat 312 334 IPR001611 GO:0005515(InterPro)
Hepe06g1185 882 Pfam Leucine Rich Repeat 143 162 IPR001611 GO:0005515(InterPro)
Hepe06g1185 882 PANTHER UNNAMED PRODUCT 101 867 - -
Hepe06g1185 882 Pfam Leucine rich repeat 387 443 IPR001611 GO:0005515(InterPro)
Hepe06g1185 882 SUPERFAMILY L domain-like 28 280 - -
Hepe06g1185 882 Pfam Protein tyrosine and serine/threonine kinase 599 873 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe06g1185 882 FunFam Putative LRR receptor-like serine/threonine-protein kinase 572 671 - -
Hepe06g1185 882 ProSiteProfiles Leucine-rich repeat profile. 432 455 IPR001611 GO:0005515(InterPro)
Hepe06g1185 882 Gene3D Transferase(Phosphotransferase) domain 1 673 880 - -
Hepe06g1185 882 Gene3D Phosphorylase Kinase; domain 1 572 671 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1247 Hepe-Chr5:59476002 Hepe06g1185 Hepe-Chr6:61349035 1.22e-88 dispersed
Hepe06g1185 Hepe-Chr6:61349035 Hepe01g1477 Hepe-Chr1:80076338 9.73e-61 dispersed
Hepe06g1185 Hepe-Chr6:61349035 Hepe02g3275 Hepe-Chr2:82360636 1.79e-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72875 PF00069 Pkinase 3.30E-35 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1185 - - - 0.0