Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1202 ATGGCTTTCTATATTCCTCGTCGGAGTTTTGTTGTCGTCGTCGGAGTTTTGACGTTTATGATGCCAACTAAATTGGTGTTCGCCATCTTTCGACCAAGCCCTTGGAAGCTCGCCCATGCCACCTTTTATGGCGATGAGACAGCATCTGAAACAATGGGAGGAGCTTGTGGGTATGGTAACTTGTTCACGAATGGCTATGGCGTCGACACAGCAGCTCTAAGCTCTACACTCTTCAACAACGGCTATGCTTGTGGAACTTGTTTTCAAATCAAATGCTACCAATCCAAAGCTTGTTATGCTCAAGTTCTCTTCACCACCGTGACGGCGACCAATCTTTGCCCGCCGAATTGGGCCGAACCGTCCGACAACGGTGGCTGGTGCAACCCTCCGAGGGTTCATTTCGACATGTCAAAGCCAGCCTTTATGAAGATCGCCGACTGGAAGGCCGGGATCATCCCCGTCGTGTATCGGCGAGTGCCATGCGGCAAAAAAGACGGCATGCGCTTCACATTACAAGGAAATGGGTACTGGCTTTTGGCGTACGTGATGAACGTCGGCGGCGGAGGCGACGTGTCGGGGATGTGGGTTAAAGGGAGCAAGACGGGGTGGATCGAGATGAGCCATAATTGGGGAGCTTCGTATCAAGCATTTTCAACTTTGGTTGGACAATCTCTATCGTTTAGAGTCACTTCCTACACGACTAAAGAGACCATAACCGCTTGGAATGTTGCTCCCTCTAATTGGGGGTTTGGTTCGACCTACAAAGCCAACATCAACTTTCGTTGA 786 50.25 MAFYIPRRSFVVVVGVLTFMMPTKLVFAIFRPSPWKLAHATFYGDETASETMGGACGYGNLFTNGYGVDTAALSSTLFNNGYACGTCFQIKCYQSKACYAQVLFTTVTATNLCPPNWAEPSDNGGWCNPPRVHFDMSKPAFMKIADWKAGIIPVVYRRVPCGKKDGMRFTLQGNGYWLLAYVMNVGGGGDVSGMWVKGSKTGWIEMSHNWGASYQAFSTLVGQSLSFRVTSYTTKETITAWNVAPSNWGFGSTYKANINFR 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 61549136 61550889 - Hsped.06g12020.1 Hepe06g1202 572577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1202 261 SUPERFAMILY PHL pollen allergen 164 255 IPR036749 -
Hepe06g1202 261 Pfam Lytic transglycolase 70 156 IPR009009 -
Hepe06g1202 261 SMART dpbb_1 70 156 IPR007112 -
Hepe06g1202 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 256 IPR007117 -
Hepe06g1202 261 CDD DPBB_EXPA_N 34 161 - -
Hepe06g1202 261 PRINTS Expansin signature 105 115 IPR002963 GO:0009664(InterPro)
Hepe06g1202 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664(InterPro)
Hepe06g1202 261 PRINTS Expansin signature 124 141 IPR002963 GO:0009664(InterPro)
Hepe06g1202 261 PRINTS Expansin signature 141 154 IPR002963 GO:0009664(InterPro)
Hepe06g1202 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664(InterPro)
Hepe06g1202 261 PRINTS Expansin signature 177 198 IPR002963 GO:0009664(InterPro)
Hepe06g1202 261 PRINTS Expansin signature 165 177 IPR002963 GO:0009664(InterPro)
Hepe06g1202 261 Pfam Expansin C-terminal domain 167 245 IPR007117 -
Hepe06g1202 261 Gene3D - 22 161 IPR036908 -
Hepe06g1202 261 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576(InterPro)
Hepe06g1202 261 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576(InterPro)
Hepe06g1202 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576(InterPro)
Hepe06g1202 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576(InterPro)
Hepe06g1202 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576(InterPro)
Hepe06g1202 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576(InterPro)
Hepe06g1202 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 166 IPR007112 -
Hepe06g1202 261 PANTHER EXPANSIN-A15 22 256 IPR002963 GO:0009664(InterPro)
Hepe06g1202 261 Gene3D - 163 261 IPR036749 -
Hepe06g1202 261 SUPERFAMILY Barwin-like endoglucanases 26 184 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1202 Hepe-Chr6:61549136 Hepe10g1240 Hepe-Chr10:47669621 4.97e-94 dispersed
Hepe06g1202 Hepe-Chr6:61549136 Hepe06g1601 Hepe-Chr6:66839854 1.71e-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1202 - - - 0.0