Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe06g1213 ATGGCATCTTCAAGGTCCCCCAATGGATCGTCTGACGATATTGTTGATACCTCCCCTTTGATGGGTAATCCGAATCGGTCTCTGGACGATACGCATTCGGGTCGGAGATTTGTGCAGAGGCAAAGTCTGCGTCAGGCGGCGAGGTTTCTGAGGCAGGCGAGTAGTCGGAGGACGATGCGTGAGCCATCTATGTTGGTCCGAGAGACGGCTGCTGAGCAATTGGAGGAGAGACAGAGTGATTGGGCGTATTCTAAGCCGGTTGTTATCCTTGACATCGTGTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCGTTTTGATTCTTAGCCGCAACGAGACTCCCACAATGCCTTTGAGGCTGTGGATTGTGGGGTATGCGTTCCAATGCGTTCTCCATATGGTGTGTGTTTGTGTTGAGTATCGTCGGCGCCGGCAGCGGCGATATTCGGCCTTCAATTCAATGGATGAGGGAGGAAATTCTTCACGCGGGCTTTCGGGTTTGGGGTCGAGAGGAAACTCGAGTCATTATGTATCACTGGCACAATTGGATGATAACGATACCAGTGTAGCAAAGCACCTCGAATCTGCAAATACAATGTTTTCCTTCATCTGGTGGATTATTGGATTCTACTGGGTATCTGCAGGAGGCCAATCTTTAGCACACGTCTCTCCTCTGCTTTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCCGTTTGCTGTTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCAGATCAGGAAGGAGCAACCAAGGAAGATGTTGAACAGTTATCAAAATTTAAATTCAGAAAGGTTGACGATGCCGAGAAACTCTCCGCTGATGTACAGGAACCTCTTGGTGGGATAATGACGGAGTGTGGTACAGATTCACCCATTGAACGCGCTCTCTCGCAGGAGGATGCGGAGTGCTGCATCTGCCTCTCTGCGTACGATGATGGCGTCGAGCTACGAGAGCTCCCGTGTGGTCACCACTTCCACTGTGCCTGCGTCGATAAGTGGCTGTATATTAATGCTACCTGTCCTCTCTGCAAGTACAACATCTTGAAAAATAGTAATCTTCCTCAAGAGGAAGTTTAA 1155 48.05 MASSRSPNGSSDDIVDTSPLMGNPNRSLDDTHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLILSRNETPTMPLRLWIVGYAFQCVLHMVCVCVEYRRRRQRRYSAFNSMDEGGNSSRGLSGLGSRGNSSHYVSLAQLDDNDTSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVDDAEKLSADVQEPLGGIMTECGTDSPIERALSQEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKNSNLPQEEV 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 61688937 61697988 + Hsped.06g12130.1 Hepe06g1213 572588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe06g1213 384 ProSiteProfiles Zinc finger RING-type profile. 329 370 IPR001841 -
Hepe06g1213 384 MobiDBLite consensus disorder prediction 1 33 - -
Hepe06g1213 384 SMART ring_2 329 369 IPR001841 -
Hepe06g1213 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 376 IPR013083 -
Hepe06g1213 384 FunFam E3 ubiquitin-protein ligase At1g12760 315 380 - -
Hepe06g1213 384 SUPERFAMILY RING/U-box 320 376 - -
Hepe06g1213 384 MobiDBLite consensus disorder prediction 1 28 - -
Hepe06g1213 384 PANTHER TARGET OF ERK KINASE MPK-1 42 374 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Hepe06g1213 384 CDD RING-H2_RNF6-like 328 370 - -
Hepe06g1213 384 Pfam Ring finger domain 328 370 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2619 Hepe-Chr2:73523339 Hepe06g1213 Hepe-Chr6:61688937 4.11e-104 dispersed
Hepe04g0549 Hepe-Chr4:58169337 Hepe06g1213 Hepe-Chr6:61688937 3.31e-75 dispersed
Hepe05g1918 Hepe-Chr5:69536973 Hepe06g1213 Hepe-Chr6:61688937 3.78e-121 dispersed
Hepe06g1213 Hepe-Chr6:61688937 Hepe10g0296 Hepe-Chr10:3146774 3.92e-42 dispersed
Hepe06g1213 Hepe-Chr6:61688937 Hepe05g0628 Hepe-Chr5:9836517 3.77e-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe06g1213 - - - 0.0