Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe06g1213 | ATGGCATCTTCAAGGTCCCCCAATGGATCGTCTGACGATATTGTTGATACCTCCCCTTTGATGGGTAATCCGAATCGGTCTCTGGACGATACGCATTCGGGTCGGAGATTTGTGCAGAGGCAAAGTCTGCGTCAGGCGGCGAGGTTTCTGAGGCAGGCGAGTAGTCGGAGGACGATGCGTGAGCCATCTATGTTGGTCCGAGAGACGGCTGCTGAGCAATTGGAGGAGAGACAGAGTGATTGGGCGTATTCTAAGCCGGTTGTTATCCTTGACATCGTGTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCGTTTTGATTCTTAGCCGCAACGAGACTCCCACAATGCCTTTGAGGCTGTGGATTGTGGGGTATGCGTTCCAATGCGTTCTCCATATGGTGTGTGTTTGTGTTGAGTATCGTCGGCGCCGGCAGCGGCGATATTCGGCCTTCAATTCAATGGATGAGGGAGGAAATTCTTCACGCGGGCTTTCGGGTTTGGGGTCGAGAGGAAACTCGAGTCATTATGTATCACTGGCACAATTGGATGATAACGATACCAGTGTAGCAAAGCACCTCGAATCTGCAAATACAATGTTTTCCTTCATCTGGTGGATTATTGGATTCTACTGGGTATCTGCAGGAGGCCAATCTTTAGCACACGTCTCTCCTCTGCTTTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCCGTTTGCTGTTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCAGATCAGGAAGGAGCAACCAAGGAAGATGTTGAACAGTTATCAAAATTTAAATTCAGAAAGGTTGACGATGCCGAGAAACTCTCCGCTGATGTACAGGAACCTCTTGGTGGGATAATGACGGAGTGTGGTACAGATTCACCCATTGAACGCGCTCTCTCGCAGGAGGATGCGGAGTGCTGCATCTGCCTCTCTGCGTACGATGATGGCGTCGAGCTACGAGAGCTCCCGTGTGGTCACCACTTCCACTGTGCCTGCGTCGATAAGTGGCTGTATATTAATGCTACCTGTCCTCTCTGCAAGTACAACATCTTGAAAAATAGTAATCTTCCTCAAGAGGAAGTTTAA | 1155 | 48.05 | MASSRSPNGSSDDIVDTSPLMGNPNRSLDDTHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLILSRNETPTMPLRLWIVGYAFQCVLHMVCVCVEYRRRRQRRYSAFNSMDEGGNSSRGLSGLGSRGNSSHYVSLAQLDDNDTSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVDDAEKLSADVQEPLGGIMTECGTDSPIERALSQEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKNSNLPQEEV | 384 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 61688937 | 61697988 | + | Hsped.06g12130.1 | Hepe06g1213 | 572588 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe06g1213 | 384 | ProSiteProfiles | Zinc finger RING-type profile. | 329 | 370 | IPR001841 | - | |
Hepe06g1213 | 384 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Hepe06g1213 | 384 | SMART | ring_2 | 329 | 369 | IPR001841 | - | |
Hepe06g1213 | 384 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 314 | 376 | IPR013083 | - | |
Hepe06g1213 | 384 | FunFam | E3 ubiquitin-protein ligase At1g12760 | 315 | 380 | - | - | |
Hepe06g1213 | 384 | SUPERFAMILY | RING/U-box | 320 | 376 | - | - | |
Hepe06g1213 | 384 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Hepe06g1213 | 384 | PANTHER | TARGET OF ERK KINASE MPK-1 | 42 | 374 | - | GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
Hepe06g1213 | 384 | CDD | RING-H2_RNF6-like | 328 | 370 | - | - | |
Hepe06g1213 | 384 | Pfam | Ring finger domain | 328 | 370 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g2619 | Hepe-Chr2:73523339 | Hepe06g1213 | Hepe-Chr6:61688937 | 4.11e-104 | dispersed | |
Hepe04g0549 | Hepe-Chr4:58169337 | Hepe06g1213 | Hepe-Chr6:61688937 | 3.31e-75 | dispersed | |
Hepe05g1918 | Hepe-Chr5:69536973 | Hepe06g1213 | Hepe-Chr6:61688937 | 3.78e-121 | dispersed | |
Hepe06g1213 | Hepe-Chr6:61688937 | Hepe10g0296 | Hepe-Chr10:3146774 | 3.92e-42 | dispersed | |
Hepe06g1213 | Hepe-Chr6:61688937 | Hepe05g0628 | Hepe-Chr5:9836517 | 3.77e-82 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe06g1213 | - | - | - | 0.0 |